CANTATAdb - search

Detailed information on CNT30701275

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30521311	Quercus lobata	Setaria italica	21.14	10.25	82.79	122	forward
CNT30379859	Quercus lobata	Manihot esculenta	37.44	34.5	90.28	216	forward
CNT30710762	Quercus lobata	Glycine max	28.94	49.12	87.43	167	forward
CNT30164816	Quercus lobata	Pistacia vera	27.38	77.45	89.87	158	forward
CNT30592165	Quercus lobata	Musa acuminata	15.77	32.38	86.81	91	forward
CNT30172855	Quercus lobata	Trifolium pratense	35.53	24.94	86.34	205	forward
CNT3059740	Quercus lobata	Arabidopsis lyrata	35.7	28.65	83.5	206	forward
CNT30610520	Quercus lobata	Gossypium raimondii	31.54	21.85	83.52	182	forward
CNT30622423	Quercus lobata	Cajanus cajan	26.69	59.69	83.12	154	forward
CNT3052558	Quercus lobata	Amborella trichopoda	24.26	33.98	82.14	140	forward
CNT3038429	Quercus lobata	Cucumis melo	11.79	21.45	91.18	68	forward
CNT30113199	Quercus lobata	Ficus carica	34.14	45.18	85.79	197	forward
CNT30333083	Quercus lobata	Cynara cardunculus	14.9	23.31	91.86	86	forward
CNT30726195	Quercus lobata	Lupinus angustifolius	31.89	30.92	87.5	184	forward

Expression of CNT30701275

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVAPVEFLHGEHVADFAVFVGLGTIEISSIYHG*

>peptide 2 (49 aa)
LGNFSVLMLIYANPTSFSLISQTFRAFSASLASLESWFSNEAEFLFQLQ*

>peptide 3 (31 aa)
MGDPFSPFNPPERPLRSPRSKIGYRGLIEKC*

Sequence

>CNT30701275
GTTTAGGAAATTTTTCTGTTTTGATGCTTATTTATGCCAATCCAACTAGCTTCTCACTAATATCCCAAACTTTTCGTGCTTTCTCAGCATCACTGGCTTC
TTTGGAGAGCTGGTTTTCAAATGAAGCTGAATTCTTGTTCCAACTCCAGTAAACACCTGATTTTGTCAGGCTCGGATCACTTACAACCTGAATGACCAAG
CTTCCTCTTCAGAAACATAGCCTTTAGTGATGTACTTCTGGAAGGGTGGAAATAGAAGCCTGAACAAGGGTATGTGCTCCCTAAACAAGCCTGTTGTAGC
AATGCAACCAGGGTAGAGAGAAGCAAAGGTAATTCCTGTCTCTTCATGGTAGCGCCTGTGGAATTCTTGCATGGTGAGCATGTTGCAGACTTTGCTGTCT
TTGTAGGCCTTGGCACCATCGAAATCTCCTCCATCTATCATGGGTGATCCGTTTAGCCCATTCAACCCTCCTGAAAGACCTCTCAGGTCCCCAAGGTCCA
AAATTGGTTACCGTGGTTTGATTGAGAAATGCTGAAGGGAACATATTTGGAATTTGTATGGTGGTTGGAAGTTAGTA