CANTATAdb - search

Detailed information on CNT30701201

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 4e-145

BLAST vs NONCODE:
NONMEST001181, E-value = 4e-94

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3069548	Quercus lobata	Quercus suber	97.92	86.34	94.13	613	forward
CNT30541271	Quercus lobata	Brassica napus	89.46	54.21	83.93	560	forward

Expression of CNT30701201

Peptides detected in this lncRNA

>peptide 1 (70 aa)
RVLPSSSCFPAKISLCWSGGIPSLSCILALTLSIVSELSTSKVMVFPVKVFTNICIPPRKRSTKCRVDSF*

>peptide 2 (36 aa)
KSPSIFKLLSCKDKPLLVWWDTFLVLYLSLDIVNSV*

>peptide 3 (30 aa)
MVLPVKVLTKICIPPLSRSTRWRVDSFWML*

Sequence

>CNT30701201
AAGAGTCCTTCCATCTTCAAGTTGCTTTCCTGCAAAGATAAGCCTTTGTTGGTCTGGTGGGATACCTTCCTTGTCCTGTATCTTAGCCTTGACATTGTCA
ATAGTGTCTGAGCTTTCAACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTCTTCACAAATATCTGCATTCCACCACGCAAACGCAGCACCAAGTGCAGGG
TTGACTCCTTTTGAATATTGTAATCAGCTAAGGTTCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCCGGTGGGATACCCTCTTT
GTCTTGGATCTTAGCTTTGACATTATCAATAGTATCAGAGCTCTCAACCTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACAAAAATTTGCATTCCA
CCTCTGAGCCGGAGCACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCGAGGGTGCGACCATCTTCAAGCTGCTTGCCGGCAAAGATCAACC
TCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGGATCTTAGCTTTAACATTATCTATAGTGTCTGAGCTTTCAACTTCCAAAGTTATGGTCTTCCCAGT
AAGGGTTTTAACAAAGATTTGCATAC