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Detailed information on CNT3070085


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9AXH0|CATA_AVIMR, E-value = 5e-103

BLAST vs NONCODE:
NONGMAT001767, E-value = 2e-25

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640190Quercus suberNymphaea colorata33.925.6778.73221forward
CNT30532478Quercus suberEucalyptus grandis27.4543.0379.33179forward
CNT30516669Quercus suberJuglans regia34.5124.386.67225forward
CNT30377107Quercus suberArabidopsis thaliana42.6458.7780.22278forward
CNT30501026Quercus suberCoffea canephora40.817.4280.08266forward
CNT30282683Quercus suberChenopodium quinoa38.6527.3682.54252forward
CNT3021611Quercus suberCitrullus lanatus34.3656.4283.48224forward
CNT30405510Quercus suberBeta vulgaris21.633081.56141forward
CNT30708912Quercus suberGlycine max90.867.9779.05592forward
CNT3046375Quercus suberPrunus dulcis51.2347.8584.43334forward
CNT30168584Quercus suberPistacia vera12.2729.5293.7580forward
CNT30638211Quercus suberCapsicum annuum26.8431.3683.43175forward
CNT3098188Quercus suberSolanum tuberosum31.1340.9382.27203forward
CNT30567580Quercus suberActinidia chinensis15.342089100forward
CNT30542456Quercus suberBrassica napus35.5853.781.47232forward
CNT30238041Quercus suberBrassica oleracea34.8229.8781.94227forward
CNT30669182Quercus suberTriticum dicoccoides27.6124.0680180forward
CNT30313764Quercus suberCamelina sativa22.5521.4383.67147forward
CNT30260467Quercus suberBrassica rapa15.3423.9887100forward
CNT30654455Quercus suberRosa chinensis41.7259.5281.25272forward
CNT30715065Quercus suberMalus domestica golden56.2925.8181.47367forward
CNT30624536Quercus suberDaucus carota32.0614.8881.34209forward
CNT30478285Quercus suberArabidopsis halleri11.8122.2584.4277forward
CNT30154060Quercus suberPrunus persica51.2333.2785.03334forward
CNT30574555Quercus suberVitis vinifera44.4835.0780.69290forward
CNT30704838Quercus suberPrunus avium25.6132.0588.62167forward
CNT3022395Quercus suberPopulus trichocarpa39.8863.2683.85260forward
CNT3038372Quercus suberCucumis melo38.0422.5583.47248forward
CNT3050211Quercus suberCucumis sativus14.5725.2789.4795forward

Expression of CNT3070085

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MAVISSSNPNSFFLQQTLDSTSWSPVKFHI*

>peptide 2 (51 aa)
MFLFNTMRPTGCRGKRSSGQVLDPLSGHKVSIQESFQLQLNQRDPWWHGCD*

>peptide 3 (93 aa)
VVIVVVSTFGSINWDLHVVWSKTVPLGITIGKDTTLKHLIIGVVDTRNHIGRVKSKLFILCKEVINVLVQHHATNWLQGQKVLRPGLGSIVWT*

Sequence

>CNT3070085
CGTGGTGATTGTTGTGGTGAGCACATTTGGGAGCATTAACTGGGATCTGCATGTAGTTTGGTCCAAGACGGTGCCTTTGGGTATCACCATAGGCAAAGAT
ACGACCCTGAAGCACCTTATCATTGGAGTAGTAGATACCAGGAACCACATAGGCAGGGTTAAAAGCAAGTTGTTCATTCTCTGCAAAGAAGTTATCAATG
TTCTTGTTCAACACCATGCGACCAACTGGCTGCAGGGGCAAAAGGTCCTCAGGCCAGGTCTTGGATCCATTGTCTGGACATAAAGTTTCCATTCAGGAAA
GTTTCCAGCTGCAATTGAATCAACGAGATCCTTGGTGGCATGGCTGTGATTAGTTCCTCCAATCCTAATAGCTTCTTCCTCCAACAAACACTTGACTCCA
CAAGTTGGTCTCCAGTGAAATTTCACATATAGCACCTTCCCAGCCTTGTTGATCAAAGTATAGGTGTTGACACTGGAGCCATCCATGTGCCTGTAGTCTT
GTGGAATACCCACATCATCAAAAAAGAAGGTGAATGTGTTCAAACTTTCTGGGAGGTGAGAGCAGTAGTCAAGAATCCTCCACATCTCTTGGATGTTAGT
CTTTGGGTTGGGCTTGAATGCATGGACCACATCTGGAAATTGCATTGAATCA