Detailed information on CNT30700733


BLAST search results

BLAST vs Swiss-Prot:
sp|P30078|CHSY_MALDO, E-value = 9e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381108Quercus lobataManihot esculenta73.8755.7380.39311forward
CNT30524897Quercus lobataPhaseolus vulgaris90.0261.7380.21379forward
CNT30628820Quercus lobataVigna unguiculata85.2745.8579.39359forward
CNT30485883Quercus lobataOlea europaea38.7256.2182.21163forward
CNT30507146Quercus lobataNicotiana attenuata38.9515.4181.1164forward
CNT3045136Quercus lobataPrunus dulcis33.9722.9983.22143forward
CNT30156261Quercus lobataPistacia vera89.5549.9383.55377forward
CNT3096662Quercus lobataSolanum tuberosum89.5541.3477.98377forward
CNT30564018Quercus lobataActinidia chinensis59.6235.3582.87251forward
CNT3087878Quercus lobataVigna radiata60.3316.2578.74254forward
CNT30145784Quercus lobataMedicago truncatula66.0325.6578.06278forward
CNT30597791Quercus lobataFraxinus excelsior21.8530.7784.7892forward
CNT30610101Quercus lobataGossypium raimondii84.5613.6682.02356forward
CNT30647274Quercus lobataRosa chinensis90.521.9182.41381forward
CNT30355925Quercus lobataLactuca sativa61.0557.3781.71257forward
CNT30151821Quercus lobataPrunus persica33.9724.8382.52143forward
CNT30705527Quercus lobataPrunus avium33.0230.0284.89139forward
CNT30644974Quercus lobataCannabis sativa62.2332.6385.5262forward
CNT3030385Quercus lobataTheobroma cacao27.5529.0787.07116forward
CNT3022855Quercus lobataPopulus trichocarpa83.8550.9481.87353forward
CNT30114122Quercus lobataFicus carica86.732.0581.64365forward

Expression of CNT30700733

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MVWLAETNSNKGFSTSGIGSAPIIIAAAPSPNKA*

>peptide 2 (41 aa)
PNPNSTPHSSPSPLYLVQDGRPTRMCNPEKGVPIRDTQRLE*

>peptide 3 (61 aa)
RTQIAHPTRAPHRSTWSKMAGPPGCAIQKREFQSEIPKGWNDSTRLFSIFFEMRPGTSLRR*

>peptide 4 (30 aa)
MKCKPNFTKMPINSSITIRKNGLVSRDQFK*

Sequence

>CNT30700733
GCCGAACCCAAATAGCACACCCCACTCGAGCCCCTCACCGCTCTACTTGGTCCAAGATGGCAGGCCCACCAGGATGTGCAATCCAGAAAAGGGAGTTCCA
ATCAGAGATACCCAAAGGTTGGAATGACTCAACTAGGCTCTTCTCAATATTCTTTGAAATGAGGCCAGGAACATCCTTAAGGAGATGAAATGTAAGCCCA
ACTTCACGAAGATGCCCATCAATAGCTCCATCACTATCAGGAAGAATGGTTTGGTTAGCAGAGACCAATTCAAATAAAGGCTTCTCAACCTCAGGAATTG
GGTCAGCCCCAATTATAATAGCAGCTGCACCATCACCAAATAAAGCCTGACCCACAAGACTATCAAGGTGGGTATCACTAGGTCCACGAAATGTGACTGC
AGTGATTTCAGAGCACACAAC