Detailed information on CNT30700154


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 5e-100

BLAST vs NONCODE:
NONGMAT000502, E-value = 2e-57

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30379273Quercus lobataManihot esculenta39.6767.586.65457forward
CNT30201346Quercus lobataPisum sativum39.544.0987.69455forward
CNT30712865Quercus lobataGlycine max37.0738.5789.46427forward

Expression of CNT30700154

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVSELSTSRVMVLPVRVFTKICIYQKQTPFKIS*

>peptide 2 (48 aa)
MEGAFLLDVVVGEGAAVLQLLSGEDQPLLVWGDSFLVLDLGLDVVDGV*

>peptide 3 (53 aa)
MPSLSWILAFTLSMVSELSTSKVMVLPVRVLTKICMPPRRRRTRWRVLSFWML*

>peptide 4 (38 aa)
MTFSRYDRSIICLCFSPALLWLKLKYTNINNQIPRISV*

>peptide 5 (44 aa)
MFPPLKQKQLNRTINHKTTIFNHKAGFFHSSESTTTETEDKVKC*

Sequence

>CNT30700154
GCAACATCATCAAATTTATTTAAAGGCCACATCAGGGCCATAGACATAAGAATAAAATTATAAAAGAGTTTTAGATGTTTCCACCATTAAAGCAGAAACA
ATTAAACAGAACCATAAATCATAAAACAACAATTTTCAATCATAAAGCAGGGTTTTTTCACTCCTCAGAAAGCACCACCACGGAGACGGAGGACAAGGTG
AAGTGTTGACTCCTTCTGGATGTTATAGTCGGCAAGGGTGCGCCCGTCCTCGAGCTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATGCCC
TCCTTGTCCTGGATTTTAGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCGACCTCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTGACGAAGATCTGCA
TGCCACCGCGGAGACGGAGGACGAGATGGAGGGTGCTTTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGTTGCTTTCCGGCGAAGAT
CAGCCTTTGCTGGTCTGGGGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCGACCTCGAGAGTGATGGTCTTG
CCGGTCAGGGTTTTCACGAAGATTTGCATCTATCAAAAACAAACGCCGTTTAAGATTTCATGAATTTCCATATAAAATTTTCCAGATTCAACAGATCAGA
TCAGATAAATCAAAACCAATAAATAGATACAAATATAGATTTTTTTTTTTTTGGTTTCATTTTCCATACAGATCTTACGAAATAATAAATCTTTCATTGT
ATTGAAAAAATAAATTTGATATAAATCCTCCACTATAATCAATTTTTTTTAGTACAGATCTGACCAAATCAATTGGATTTGAGCAAAAAATAGCACAAAT
TTCAATATGACTTTTTCCAGATATGATAGATCTATAATCTGTCTATGCTTTTCACCTGCTTTATTATGGCTTAAGCTAAAGTACACTAATATAAATAATC
AGATTCCACGAATTTCCGTATAAATCACAGAGATCTATAATTCCTTTGATGATTATTTAGGTTTGGATTTCCCAAATACTATAGATATTTACTATGCTAT
GCTTCAAATCAAGAAGAGAAATCAAAAAAGAGGACTGGAATAATAAATAAAA