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Detailed information on CNT307001


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT000708, E-value = 9e-55

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30550760Zea maysOryza brachyantha32.9218.6983.49212reverse complement

Expression of CNT307001

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MKWRILLKMPTYPMDKQKMIVAATMCLHNFIRENNALDEDFQRCDRDPDYIPTIPSRYR*

>peptide 2 (65 aa)
MLQESTMLLMLDIQIGMGTWPRTKDNGIMFRNGEMVLHLMVSKSSSIIYTQVYGMLLNAHLVYGR*

>peptide 3 (36 aa)
MEDEMENSSKDANLSYGQTKNDCCCYNVSPQFHPRE*

>peptide 4 (37 aa)
MHWMRIFRDVIETQIISLLFHPVIGDMSLRMHQIHPP*

Sequence

>CNT307001
AAAATTTGGTCTACTTTTTGTCCACATATTTTTCAAGGTTCTAACTCAAGTATAATTGTATGTTACAGGAAAGTACTATGTTGTTGATGCTGGATATCCA
AATAGGGATGGGTACTTGGCCCCGTACAAAGGACAACGGTATCATGTTCCGGAATGGAGAAATGGTCCTCCACCTAATGGTGAGCAAGAGCTCTTCAATC
ATTTACACTCAAGTCTACGGAATGTTGTTGAACGCACATTTGGTGTATGGAAGATGAAATGGAGAATTCTTCTAAAGATGCCAACTTATCCTATGGACAA
ACAAAAAATGATTGTTGCTGCTACAATGTGTCTCCACAATTTCATCCGCGAGAATAATGCATTGGATGAGGATTTTCAGAGATGTGATCGAGACCCAGAT
TATATCCCTACTATTCCATCCCGTTATAGGTGACATGTCCCTCAGAATGCATCAGATACATCCACCATAGGGTCGAGTAGTAGGAACATGAATAGGTTCC
GTGATGATGTATCGAAGGTACTTTGGGAGTCGAGGTGATTAGAAAAGGTGGTTCGTGTCATATTTTGGATATTGTGTCGTGCTAGTTTTATGCAATTTAT
GGATTAAACATTTGAGACCATTTTATGCACTACTATGACGGGAA