Detailed information on CNT3070001


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692428Quercus suberOryza sativa36.5221.5682.72191forward
CNT30524833Quercus suberPhaseolus vulgaris26.969.3282.27141forward
CNT3042646Quercus suberPrunus dulcis27.5324.8381.94144forward
CNT3067156Quercus suberLeersia perrieri11.4722.386.6760forward
CNT30596039Quercus suberOryza meridionalis10.1320.2392.4553forward
CNT30641906Quercus suberCannabis sativa20.2711.9984.91106forward
CNT30100699Quercus suberOryza rufipogon36.5217.3682.72191forward
CNT30116395Quercus suberOryza nivara27.3417.7483.22143forward
CNT30603857Quercus suberOryza punctata36.5221.9582.72191forward

Expression of CNT3070001

Peptides detected in this lncRNA

>peptide 1 (32 aa)
LGEAPTRMSLEKSSGRRMEAKIPIMAETEWPT*

Sequence

>CNT3070001
CTTGGAGAAGCGCCGACGAGGATGAGCTTGGAGAAGAGTTCAGGGCGGCGAATGGAGGCTAAGATTCCGATCATGGCGGAGACGGAGTGGCCGACGTAGG
CGCAACGATCGACACGGTGGGCGTCGAGAGTGGTGTAGCGGCGAAAATCGAAGAAGTCAGGGTTGACACTGCCGGCACAGACGAGGTCATAGAGAATGAC
TCGGTAGTGGGGTGTGAAGTAAGGGAGAATTCTCTGCCACACGGACTGGTCTGTGCCGAAGCCATGAGCCAGAACCAAGGTTCTCTGACCGGACCCTTCT
ACACGGACATTGAGATTTTCTAAGAGACTGGTGCCCATGTGGATTGTGGGAGAGAGAGACAGAGAGAGAGAAAAGTGAGAAAAGAAAGAGGAAAATGAGG
AGTGTGATTTATTGGGCAATCCAATGGGGGTTACTGTGTGAGAAGGCAAAATAGGTGGGTAGGTGTTGTGGGGTTTTGGTTTTTTATATCTTATCTCTCT
CTGTCAATTGTTGTTGTTTGTGT