Detailed information on CNT30698329


BLAST search results

BLAST vs Swiss-Prot:
sp|Q71T45|H32_EUPES, E-value = 9e-61

BLAST vs NONCODE:
NONBRAT001321, E-value = 9e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675375Quercus lobataSetaria viridis29.0348.5884.67137forward
CNT30523795Quercus lobataSetaria italica59.5345.483.63281forward
CNT30709007Quercus lobataGlycine max42.884.8790.59202forward
CNT30168718Quercus lobataPistacia vera21.616.6785.29102forward
CNT3090157Quercus lobataSolanum tuberosum36.2326.5185.38171forward
CNT30538358Quercus lobataBrassica napus13.1421.6890.3262reverse complement
CNT30240523Quercus lobataAvena sativa64.6248.7285.25305forward
CNT30309861Quercus lobataCamelina sativa39.1929.8487.57185forward
CNT30464179Quercus lobataSaccharum spontaneum20.1319.4788.4295forward
CNT30686633Quercus lobataTriticum urartu14.8325.279070reverse complement
CNT30719922Quercus lobataTriticum spelta64.6251.6183.28305forward
CNT30329187Quercus lobataDioscorea rotundata19.723.9786.0293forward
CNT30148402Quercus lobataBrachypodium distachyon53.8151.7383.46254forward
CNT30114434Quercus lobataEutrema salsugineum17.5820.8589.1683forward
CNT3018856Quercus lobataCyanidioschyzon merolae12.525.6589.8359forward

Expression of CNT30698329

Peptides detected in this lncRNA

>peptide 1 (39 aa)
LILLASSISLGIMVTLLALSPLILLASWISLGIMVTLLA*

>peptide 2 (60 aa)
SDPPSEQHILRHNGDSLGSLASDPPSELDILRHNGDSLGVNGAQVGVLEESDQVSLGGFL*

Sequence

>CNT30698329
CTCTGATCCTCCTAGCGAGCAGCATATCCTTAGGCATAATGGTGACTCTCTTGGCTCTCTCGCCTCTGATCCTCCTAGCGAGCTGGATATCCTTAGGCAT
AATGGTGACTCTCTTGGCGTGAATGGCGCACAGGTTGGTGTCCTCGAAGAGTCCGACCAAGTAAGCCTCGGCGGCTTCTTGTAGAGCCGCGACGGCGCTG
CTCTGGAATCGGAGCTTTCGGATCAGAAGCTCCGTGCTCTTCTGGTACTTCCTGATCTCCCTCAGAGCCACGGTTCCGGGCCTGAACCTGTGTGGCTTCT
TCACTCCTCCGGTCGCCGGAGCTGACTTCCTGGCGGCCTTTGTTGCCAGCTGCTTCCTTGGCGCCTTGCCTCCGGTGGACTTGCGAGCGGTTTGCTTGGT
ACGAGCCATTTGGAGAAGAGAAAGATCTGTTTGGTTGGTGGGAAAATGAGGGAAAAGTGAAGAGAAAGTGAG