« Back to Oryza sativa search


Detailed information on CNT30697958


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30110171Oryza sativaOryza longistaminata24.614.7184.78138reverse complement
CNT30115821Oryza sativaOryza nivara68.2772.8196.87383forward

Expression of CNT30697958

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MGYVREGKRSLDPPLPSPPMPPSPKQPPPIISLESRRMPKSKSYEEESHGDPVSERAGGRRD*

>peptide 2 (42 aa)
MREGGGEMTGSAWEGKRSPDPPLPSPPTADPRERGANRRWDM*

>peptide 3 (43 aa)
LKPSLRPAGQLLANLRERGRRDDGIHAGGEVVTRSDAPVAADG*

Sequence

>CNT30697958
CTTGAAACCTTCTCTCCGACCAGCCGGACAGCTACTGGCAAATCTGCGCGAGAGGGGGCGGAGAGATGACGGGATCCATGCGGGAGGGGAAGTGGTCACA
AGATCCGACGCTCCCGTAGCTGCCGATGGCTGATCCATGCGAGAGGGGGGCGGAGAGATGACGGGATCAGCGTGGGAGGGGAAGAGGTCACCGGATCCGC
CCCTCCCATCGCCGCCGACGGCGGATCCGCGCGAGAGGGGAGCGAACAGACGATGGGATATGTGAGGGAGGGGAAGAGGTCGCTGGATCCGCCCCTCCCG
TCGCCGCCGATGCCGCCATCACCAAAACAGCCACCACCGATCATTTCGCTGGAGAGCCGCAGGATGCCCAAATCCAAGTCCTATGAGGAGGAAAGCCATG
GGGATCCAGTGAGTGAGAGGGCAGGAGGGAGGAGGGACTGAGGGAGAGAGTTGTTTGGTCTGGGTGAGTGGGAGGGGAGGAGGGAGAGTCAAGGAGAGAC
CGTTAGAGACTGGGAGAAATATCATCGGAAGAGACGAGAGACTCTTGCTGTTGCTTTCTTA