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Detailed information on CNT30697919


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SLN8|DBR_TOBAC, E-value = 2e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30186275Oryza sativaSecale cereale13.9637.2389.5386forward
CNT30597190Oryza sativaOryza meridionalis44.3270.3686.45273forward
CNT30578542Oryza sativaOryza barthii54.5567.3388.99336forward

Expression of CNT30697919

Peptides detected in this lncRNA

>peptide 1 (30 aa)
DELFSNATASEEPDERCRCCVEPLNDIFYV*

>peptide 2 (35 aa)
MTPFLPSGTQPSPPRTGSTCHSSQTHGSPPCAGAW*

>peptide 3 (46 aa)
TSCFPTLRPVKSLMSAAGAVSSPSTTSSTYDTFSSFRYPAISSSNR*

>peptide 4 (43 aa)
MEALHAQALGNDVVQVSHPLGLLQVVLRDHPTCHNPTTQTHIR*

Sequence

>CNT30697919
GACGAGCTGTTTTCCAACGCTACGGCCAGTGAAGAGCCTGATGAGCGCTGCCGGTGCTGTGTCGAGCCCCTCAACGACATCTTCTACGTATGACACCTTT
TCTTCCTTCAGGTACCCAGCCATCTCCTCCTCGAACCGGTAGTACCTGTCATAGTAGTCAAACACATGGAAGCCCTCCATGCGCAGGCGCTTGGTAACGA
TGTAGTACAGGTTTCGCACCCCCTCGGGCTGCTCCAGGTTGTACTGCGAGATCATCCCACATGCCACAATCCGACCACCCAGACTCATATTAGGTAGTAC
TGCGTCTAGCATTTTGCCGCCCACATTCTCATAGTAGATATCAATACCCTCTGGAAAATATCTGAAATCAACCAAATCAACTTGATTGAGTCATTGAGTT
TGAATTCTATTAGTGTTGGGAATGCAAAGTATATGAGATTGCACAAACCTTTTCGTCATAACCAGCACTGCCGATCACGTAGCAACCTGTGATCTTAGCA
AGCTGCCCAACAACCTGACCTACAGCACCAGATGCTCCTGAGATAAAGACATATTCACCTTTCTTTGGCTTGGGCACGTCAAAGAATCCAGCATAGGCGG
TAAGCCCTGGCATTCC