Detailed information on CNT30697916


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QYL2|NLT2B_ORYSJ, E-value = 1e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30597117Oryza sativaOryza meridionalis44.6264.0682.76319forward
CNT30371435Oryza sativaOryza glumipatula38.7480.5294.22277forward
CNT30104413Oryza sativaOryza rufipogon46.1548.1100330forward
CNT30582166Oryza sativaEchinochloa crusgalli20.8423.7682.55149forward
CNT30118004Oryza sativaOryza nivara28.3955.0199.51203forward

Expression of CNT30697916

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MHVESLALSGTRTPRKGAKRTRRTHKKKKAS*

>peptide 2 (38 aa)
MILLVLDTEFGSTHRPRQNLLGGSCRRCAGLRSCLLPP*

>peptide 3 (50 aa)
KELYVCVIIQNKHVVQGVAVHACRISSSLWYTYPSKRSKTYETNTQEEES*

>peptide 4 (67 aa)
MAAMVVCGPARSRAATRATNTSCARAISILVVCADDRSTLLLLLVCGARLLLQVRSIDENSRECRGL*

Sequence

>CNT30697916
AAAAAGAGCTATATGTATGTGTAATAATCCAAAACAAGCACGTAGTACAAGGAGTTGCAGTACATGCATGTAGAATCTCTAGCTCTCTCTGGTACACGTA
CCCCTCGAAAAGGAGCAAAACGTACGAGACGAACACACAAGAAGAAGAAAGCTAGCTAGCGTGACCGGGCCGATCAACCATGGATGCATGGTGATTGATC
GAGACCTTAGCTAGCTCATCTTTTATTCCAGAATACAGATATGATACTACTAGTACTGGATACAGAATTCGGCTCCACACATCGACCCAGGCAGAATCTA
CTAGGTGGCAGTTGCAGGCGGTGCGCCGGTCTGCGGTCGTGCTTGCTGCCGCCTTGAGGCTCCTCACGCCGCTGCAGCAGGCCGCCGACGGCCCGGCGCC
GCCGCGGGCGTAGGTCAGGCAGGGCCCGACGGCGGAGTTGACCTGGCCGCAGCTGAGGCAGGGCGACACGGCGGAGTTGACCTGGCCGCAGCTGATGGCG
GCCATGGTGGTGTGTGGGCCCGCCAGGAGCAGAGCTGCCACGAGGGCGACCAACACCAGCTGTGCACGGGCCATCTCGATCTTGGTCGTGTGTGCTGACG
ATCGATCGACTTTGCTGCTGCTGCTGGTGTGTGGTGCTCGTTTGCTGCTGCAGGTGAGATCGATCGATGAGAATTCCCGGGAATGTAGGGGGCTTTAAAT
AGCTATGATTTCATC