Detailed information on CNT30697910


BLAST search results

BLAST vs Swiss-Prot:
sp|F4IUU1|RLP27_ARATH, E-value = 1e-13

BLAST vs NONCODE:
NONORUT002116, E-value = 8e-23

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555607Oryza sativaOryza glaberrima68.0355.8386.35249forward
CNT30578595Oryza sativaOryza barthii10065.9599.45366forward

Expression of CNT30697910

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MGPSMLLKLRSKKSISRGSRGSDPRLVMLLCDMFRRRKYMPLHVSHAH*

>peptide 2 (52 aa)
MSCSLGALQIDGIFPDSLFLEALKVKVSPRYGPFNAVETEIKEVNLKRKQRI*

Sequence

>CNT30697910
GACATCCTCCATTAAACAAGATGGGATCGAACCACTCAAGTTATTGTAAGAGAGATCAATGAGTTGTAGTCTCGGAGCACTACAGATTGATGGAATATTT
CCAGACAGTTTGTTTTTGGAAGCCTTGAAAGTAAAAGTTTCACCAAGGTATGGGCCCTTCAATGCTGTTGAAACTGAGATCAAAGAAGTCAATCTCAAGA
GGAAGCAGAGGATCTGATCCAAGACTTGTAATGTTATTGTGTGATATGTTCAGGAGGAGAAAGTACATGCCTCTCCATGTCTCCCATGCCCACTGAGGTA
TAGCTCCCTGGATTTTGTTATGCGAAAGGTCAAGAGTGGTGATCTCATGGAGATGCTTCAAGATGT