Detailed information on CNT30697886


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30597173Oryza sativaOryza meridionalis55.4279.0194.24399forward
CNT30371519Oryza sativaOryza glumipatula41.3977.8194.3298forward
CNT30104637Oryza sativaOryza rufipogon56.2568.8894.32405forward
CNT30578440Oryza sativaOryza barthii56.2568.8894.57405forward
CNT30117979Oryza sativaOryza nivara41.8173.4194.35301forward

Expression of CNT30697886

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MDAAGGGGSSRRSPGAIQSACPPSANGERRWRRSISGGLLCSPVGSFSSVL*

>peptide 2 (49 aa)
MVPYVSLLFPFSLPRGFAPRLSPLSRRLAATRSPAAAAGGDGCCGRRRL*

>peptide 3 (52 aa)
MLRAAAALAVVHREPSSPLVPLQPTASDDGGEVFQAACSAPLLEVSVLFYED*

>peptide 4 (40 aa)
RKNRFSYEGDSPVPVPLFSRAVPLMNRMETKGGGFQENLS*

>peptide 5 (32 aa)
MTIATWSHMSVSCFLSLYLADLLLVFLRSLAG*

>peptide 6 (29 aa)
MAAKYFRRPALLPCWKFQFCFMKIRNFSF*

Sequence

>CNT30697886
CACGGAAAAATCGATTTTCCTATGAGGGCGATAGCCCCGTGCCGGTTCCTTTATTTTCCCGTGCGGTTCCACTTATGAACCGCATGGAAACAAAAGGGGG
CGGCTTCCAGGAAAATCTATCGTGAAGTAGTGTTTACTATGTGAGCTCGATGACCATTGCTACATGGTCCCATATGTCAGTCTCCTGTTTCCTTTCTCTC
TACCTCGCGGATTTGCTCCTCGTCTTTCTCCGCTCTCTCGCCGGCTAGCCGCTACCCGGTCGCCGGCGGCGGCCGCCGGCGGAGATGGATGCTGCGGGCG
GCGGCGGCTCTAGCCGTCGTTCACCGGGAGCCATCCAGTCCGCTTGTCCCCCTTCAGCCAACGGCGAGCGACGATGGCGGCGAAGTATTTCAGGCGGCCT
GCTCTGCTCCCCTGTTGGAAGTTTCAGTTCTGTTTTATGAAGATTAGAAATTTCAGTTTTTGATCTAGGAAAAGGAAATCCAGCCATGTGAGTATGTGAC
TTCAATTATAAATTTAGCTTATATTTATTCGAAATAGCTGAGGGCATGCTCACCAGTCACTATTTCACTTCATGTTGTTGTGAACATCAGTAGTATCAGT
CTACCAGATATGTAAGATCAGAGATTTTTTTGCTTCTCTCTACTTTGCTACGTCAGAATGATTAGGACATGTCAAAATTAATTTTGATGAAACAAAGGGA
TGGTTCACTTTTACAGCCTC