CANTATAdb - search

Detailed information on CNT30697883

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3068317	Oryza sativa	Leersia perrieri	35.07	45.8	86.03	229	forward

Expression of CNT30697883

Peptides detected in this lncRNA

>peptide 1 (48 aa)
LYVCVIIQNKHVVQGVAVHACRISSSLWYTYPSKRSKTYETNTQEEES*

>peptide 2 (38 aa)
MILLVLDTEFGSTHRPRQNLLGGSCRRCAGLRSCLLPP*

>peptide 3 (67 aa)
MAAMVVCGPARSRAATRATNTSCARAISILVVCADDRSTLLLLLVCGARLLLQVRSIDENSRECRGL*

>peptide 4 (31 aa)
MHVESLALSGTRTPRKGAKRTRRTHKKKKAS*

Sequence

>CNT30697883
CTATATGTATGTGTAATAATCCAAAACAAGCACGTAGTACAAGGAGTTGCAGTACATGCATGTAGAATCTCTAGCTCTCTCTGGTACACGTACCCCTCGA
AAAGGAGCAAAACGTACGAGACGAACACACAAGAAGAAGAAAGCTAGCTAGCGTGACCGGGCCGATCAACCATGGATGCATGGTGATTGATCGAGACCTT
AGCTAGCTCATCTTTTATTCCAGAATACAGATATGATACTACTAGTACTGGATACAGAATTCGGCTCCACACATCGACCCAGGCAGAATCTACTAGGTGG
CAGTTGCAGGCGGTGCGCCGGTCTGCGGTCGTGCTTGCTGCCGCCTTGAGGCTCCTCACGCCGCTGCAGCAGGCCGCCGACGGGCCGGAGCCGCCGCGGG
CGTAGCTGAGGCAGGGCGACACGGCGGAGTTGACCTGGCCGCAGCTGATGGCGGCCATGGTGGTGTGTGGGCCCGCCAGGAGCAGAGCTGCCACGAGGGC
GACCAACACCAGCTGTGCACGGGCCATCTCGATCTTGGTCGTGTGTGCTGACGATCGATCGACTTTGCTGCTGCTGCTGGTGTGTGGTGCTCGTTTGCTG
CTGCAGGTGAGATCGATCGATGAGAATTCCCGGGAATGTAGGGGGCTTTAAAT