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Detailed information on CNT30697878


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30104316Oryza sativaOryza rufipogon77.2110098.21559forward
CNT30578598Oryza sativaOryza barthii7510099.82543forward
CNT30118094Oryza sativaOryza nivara69.4810098.01503forward

Expression of CNT30697878

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MSIRVPMNFSLSPSPINEDGSMHISLRILNSCFLSARSTPARF*

>peptide 2 (34 aa)
CFHFFYISAPDHHLLVFQTSRPCCCEETCPSGCR*

>peptide 3 (96 aa)
MSIKEPMNLSLSPSPIAEDVSMNILLRILMACFFSTESHWSHSRILSKVPIALLLVDISCHRILFDFVGPYINRINRLSIFTPSSAIQDHSLCCFL*

Sequence

>CNT30697878
ACTGCTTCCACTTCTTCTACATATCTGCACCAGATCATCACCTGCTAGTTTTTCAAACAAGTCGCCCTTGCTGTTGTGAAGAAACATGTCCATCAGGGTG
CCGATGAATTTTTCTCTGTCACCTTCGCCCATAAACGAAGATGGATCCATGCATATTTCTTTGAGAATACTTAACTCTTGTTTCTTGAGCGCCAGATCTA
CACCTGCCAGATTTTGAAAGTCACCATTACTGTTGTGAAGAGACATGTCCATCAAGGAGCCAATGAACCTTTCTCTGTCTCCTTCACCCATAGCCGAAGA
TGTATCCATGAATATCCTTTTGAGAATCCTTATGGCGTGTTTCTTCAGCACAGAGTCACATTGGTCACACTCAAGAATACTCTCCAAGGTGCCGATTGCT
TTGCTGCTTGTTGATATTTCATGCCACAGAATATTGTTTGATTTTGTAGGGCCATACATAAATCGCATAAATCGGCTTAGTATCTTCACCCCGAGCTCTG
CCATACAGGACCATTCGTTATGTTGTTTTTTGTGAAGTGATCCCTTGGACGTTATAAGTGCCACAATCTTGTTGATCAAGGCCGGATCATCTGTGTTGCT
CATGAGGAACAAGTTGTTCTTGTCGTAGGAGAGCTTTAAAAGGATCTGCATGCCTGTAAGTTGCATCTGTTTATAATCTTTGGGGTAATAATCCTTTTCT
TTGACAGAAATCTGGTGATCATCC