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Detailed information on CNT30697800


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84N29|NLTP3_WHEAT, E-value = 5e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30371396Oryza sativaOryza glumipatula101.18100.1598.1686forward
CNT30578175Oryza sativaOryza barthii41.5946.2397.87282forward
CNT30118058Oryza sativaOryza nivara52.3666.48100355forward

Expression of CNT30697800

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MDDSIYFYLLQSVERLMGKPTLTPHLPGMPAAAWRSAVVRAALFSPLTPLQHPWVRPPLPVT*

>peptide 2 (43 aa)
MHGAIADPTCPHVIAADAPGAATTIAITITAATALKFKAAISI*

Sequence

>CNT30697800
AGAAAATTAAGATAGCATGCTGATGCACGCACGGAGCGTGCAACATAAAGTATACAGAGATACAGAGAGAGATGACCAGCGCTGAATGATATGCCCCAGC
TGTTATTTTTACTGTAGCTATTATTTTGGCTAGTTGATCAACTGCGAGCCAGCATCGATCGATATATCGATCGGTCGGTCTACGCAGGATTAATCGATCT
AGCTGACCCTGCACCAATGAAATAATCATGCATATATACAGTGGATTAGTCAGTAAATTAAGTTGAATTAACCTGAAAAAAGTAACATGCATGGATGATA
GTATATATTTTTACTTGCTGCAGTCAGTGGAGAGGCTGATGGGGAAGCCGACGTTGACGCCGCACTTGCCGGGGATGCCGGCGGCGGCCTGGCGGTCAGC
GGTGGTGCGGGCGGCGTTGTTCAGCCCCTTGACGCCGTTGCAGCATCCCTGGGTGAGGCCACCCCTCCCCGTCACGTAAGAGATGCACGGCGCGATCGCC
GACCCCACCTGCCCGCACGTTATCGCCGCCGACGCCCCCGGCGCCGCCACCACCATCGCCATCACCATCACGGCGGCCACCGCCTTGAAGTTCAAAGCCG
CCATATCTATCTAGACTGATGGATGATCGATCGAGTAGCTAGGTAAGCTTCGTTCAGTCAGCGTCTCCTCGTCGCCGG