Detailed information on CNT30697771


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677121Oryza sativaSetaria viridis20.2516.3790.7765forward
CNT30183781Oryza sativaSecale cereale20.569.6693.9466forward
CNT30296412Oryza sativaTriticum aestivum47.3533.9386.84152forward
CNT30391100Oryza sativaTriticum turgidum47.6625.1685.62153forward
CNT30438855Oryza sativaAegilops tauschii47.3528.2585.53152forward
CNT30257614Oryza sativaAvena sativa20.2514.8493.8565forward
CNT30663481Oryza sativaTriticum dicoccoides46.7328.5786.67150forward
CNT30138781Oryza sativaLolium perenne21.511.6994.269forward
CNT30352984Oryza sativaEragrostis tef20.5611.2890.9166forward
CNT30367377Oryza sativaSorghum bicolor20.5615.4989.3966forward
CNT30111026Oryza sativaOryza longistaminata68.8560.5595.93221forward
CNT30104515Oryza sativaOryza rufipogon10064.9899.69321forward
CNT30118046Oryza sativaOryza nivara10082.1100321forward

Expression of CNT30697771

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MPGIPIGGGGPPIPGGAGKARGSNWAYMFC

>peptide 2 (58 aa)
MNSSQVDDNSVASHWRHPICWHRSRTHRRHARHPHWRWRTAHTRRSRQGKRKQLGIHVL

Sequence

>CNT30697771
CAGCAATTAACTCGACCTGGCTAGAGATTTCACTCGCCAAAATTGTCCTGGTACCAAAAGAATCAGTTTAAACAACCAATAATAGCACATCTACAACTTG
AAAGATGCCTCCTCTTCTGTGTAAATTGAAATTCTTATCTAAATGAACTCTTCACAAGTGGATGATAACTCAGTAGCTTCCCATTGGAGGCATCCCATAT
GCTGGCATAGGTCCAGGACCCATCGGAGGCATGCCCGGCATCCCCATTGGCGGTGGAGGACCGCCCATACCAGGAGGAGCAGGCAAGGCAAGAGGAAGCA
ATTGGGCATACATGTTCTGCA