CANTATAdb - search

Detailed information on CNT30697620

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001336, E-value = 4e-132

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30604527	Oryza sativa	Oryza punctata	29.56	99.37	88.5	313	forward

Expression of CNT30697620

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MMDLYIKLSVCVPRLIPGRGFYAQISSEITSEFPGVTLGIW*

>peptide 2 (60 aa)
MIAPVVNYRTGGSHWVLDSGCTQHMTGDRAMFTTFEEGGKEQEKVTFGDNSKGKVIGLGL*

Sequence

>CNT30697620
GATCTCTTCAATCCAAGGCTATAAATAGGACCCCCTAGTCCTCCTCTTTCGTTTGCCCCCTCTCCCGTGATCTCCCGTGCCTCGTAGCGCCGCCGCCACG
TGCTCCACCCCGCCGTCGTCGCCGGCCGAGCTCCATCCGCGTCGCGCCGCCGCCTCCGTCGTCGCCGCCGGTCGCCGTCACCTCCGTAAGGTGCGCCGAG
GTGTGGAGAAGCCCGGCCGCTCTCTCCCCGCTGTCGCCGGTCACCGGAGTCCCGTCGCCACCGCCGACCGAAGCCGCGCCGCCAATAGACCTCGTCGCCG
GCCGTCGTCGTTCGTCGTTTGGTTCGAGGCTTGTCATTTCCGTCATTGCGAAGGTTCGTGATTGCGCCGGAAGTATTCAAGAAGATTAATTGAAGACCGA
TTATTGCAAGTTGAAGATAAAGGATCCAGAAGGAGAAGACGTTTGGCTTATACCCCAGTTGAGCTGCCTGTGGGAGTGGAGCTGAAGCCATCGCTAGATC
GTTATTCCGCTGCTGTTTTCTTTTCTTTTGTAAGTGTGTAACGTTATTATTATGATGGATTTGTATATTAAATTGTCAGTTTGTGTACCTCGGCTGATTC
CTGGACGAGGATTTTATGCACAAATAAGTTCGGAAATTACTAGTGAATTTCCGGGCGTGACATTGGGCATTTGGTGAATGATTGCTCCGGTGGTGAATTA
CCGCACCGGTGGGAGCCATTGGGTGCTTGATAGTGGATGCACTCAACACATGACCGGTGATAGGGCTATGTTCACCACATTTGAAGAAGGAGGGAAAGAA
CAAGAGAAAGTGACATTTGGAGACAATAGCAAAGGAAAGGTAATTGGGTTAGGCTTGTAGCTTTGCTTGTGTGCTTCGCGTAGCTTCTGTCGTTCCGGAG
GTTCCCGAAGCGTGGTTTGCGGTCGTCGCCGAAGGTTCGGAAGGCCGTTCTCTCTGAGCAAGTAAGAGAAGTTTTGGAGAAGAAGTCTTAGGTGGAGTCC
TGGCTTATACCCCAGTTGAGCGCCTGTGAAGATGGAGCCGTAGGCCCGCTAGTCCGCTG