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Detailed information on CNT30697589


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555659Oryza sativaOryza glaberrima101.6278.2897.13627forward
CNT30578521Oryza sativaOryza barthii10058.5498.87617forward
CNT30117818Oryza sativaOryza nivara90.4459.4288.71558forward

Expression of CNT30697589

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MSNNKTSVVSSSAAGSMSRSLLQSSTTTDDEQVTEMLLHW

>peptide 2 (37 aa)
MYSSTVPFFVSCCVLSSRSATNIHSQGVLPLRSVRLR*

>peptide 3 (44 aa)
MDVLQYRAIFCFLLCSEQPVGDKHTQSRCSAASFCPPKVKTKWS*

Sequence

>CNT30697589
GCAAAAAATTGCTCTGGTTTTCTGGTGGTTGTAGAGAGAAGATATATGGGGACCACAAATTGTCCCTCGTTACTGGTCCCTGAATAGGGACATGCTTGCT
TTGACTCCAATGGAACGCAATCAATTGTTCCAACCGGCTGGCCAGCAGTGACCGGGATGTTTTACTCCATCAAAAACATGGCGTGACCGTGCGAGTCAAG
AAGGAACACGCCAATACCTTATGTTCAGTTTGACAGCACGCCCGGATGGATGTACTCCAGTACCGTGCCATTTTTTGTTTCCTGTTGTGTTCTGAGCAGC
CGGTCGGCGACAAACATACACAGTCAAGGTGTTCTGCCGCTTCGTTCTGTCCGCCTAAGGTAAAAACAAAATGGAGCTGATTTTGAAAAGAGAACTACTG
CCGGGCGAGGATGGTCTGGATGGATGGATCAACTTTGAAAAGAAATAAGATGTATGTTAAACATCTCATTCTTTTGCTGATGCGCTGAAACGAGTCATGT
CGAACAACAAGACATCAGTGGTCAGTTCATCAGCAGCTGGCAGCATGTCAAGAAGCTTATTGCAATCCTCAACGACGACTGATGATGAACAGGTGACGGA
GATGTTGCTGCACTGGC