Detailed information on CNT30697494


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555645Oryza sativaOryza glaberrima74.0452.6297.42271forward
CNT30450733Oryza sativaSaccharum spontaneum16.3921.4391.6760forward
CNT30371486Oryza sativaOryza glumipatula74.0454.5397.42271forward
CNT30106587Oryza sativaOryza longistaminata71.8667.7892.78263forward
CNT30104741Oryza sativaOryza rufipogon73.7781.82100270forward

Expression of CNT30697494

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MRAPPLSSSSSRRSCRRRGCRSHRRSRRRWRRKKNEIEPDPNRTEPGGGGEANPPL

>peptide 2 (38 aa)
RSTLRFIHSFHLIKANTRRAFFLRSKTQMGNHTVTQTR*

>peptide 3 (36 aa)
EHTKIHSFISFDQSKHETSFLLAIKNTDGQPHSNTN*

Sequence

>CNT30697494
CGGAGCACACTAAGATTCATTCATTCATTTCATTTGATCAAAGCAAACACGAGACGAGCTTTCTTCTTGCGATCAAAAACACAGATGGGCAACCACACAG
TAACACAAACTAGATAGTAGTTCCACACAAAACTAACGATGATAACGATCGGATGATGATGATGGTAGCTCGATTAGATAGATAGATAACTTGGCCATGA
GGGCCCCACCGCTCAGTTCCTCCAGTTCCCGTCGGAGTTGCCGCCGCCGCGGCTGCCGTAGCCACCGCCGATCTCGCCGAAGGTGGAGAAGAAAAAAAAA
CGAAATCGAACCGGACCCGAACCGAACCGAACCGGGAGGGGGAGGAGAAGCCAACCCACCTCTGAG