Detailed information on CNT30697427


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01517|ALFC2_PEA, E-value = 4e-91

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524487Oryza sativaSetaria italica21.6518.4489.43246forward
CNT30139084Oryza sativaLolium perenne28.738.984.05326forward

Expression of CNT30697427

Peptides detected in this lncRNA

>peptide 1 (33 aa)
FCVASTSDCPPDKNCTKQQSINIIDQLYFQVYS*

>peptide 2 (37 aa)
MSTIFLPSTVDWYRVSSKRIAPEMYCPKPGAVTRRVR*

>peptide 3 (63 aa)
MPCSPSRRISGSTIGTSPLNGGVAGKAPGSLLHGEFRWAVGDADNSAPEDEELHVRHWNDIHK*

>peptide 4 (41 aa)
LRRLHLRLPTRQELHQTTINQYYRSALLSGLFLIIYICRDS*

>peptide 5 (64 aa)
SASPPPPTAHPTRTAPNNNQSILSISSTFRFILDHLHLQRQLVVSLCKKNHVRISRSTFAVAVS*

>peptide 6 (41 aa)
MLTVEEDLRLDNRHQPVKWRRSGQGPRQPPSRRVQMGRWGC*

Sequence

>CNT30697427
TTCTGCGTCGCCTCCACCTCCGACTGCCCACCCGACAAGAACTGCACCAAACAACAATCAATCAATATTATCGATCAGCTCTACTTTCAGGTTTATTCTT
GATCATCTACATCTGCAGAGACAGTTAGTAGTATCGTTGTGCAAGAAGAATCATGTCAGAATTAGCAGATCAACATTTGCAGTGGCAGTTTCTTGATCAA
CATTTCCAGTCAGGTTAAGCCATTTTGCAAGAAGTAAAGCAATATTAGTAGCTTCCTAAGCTTTAGTTTCAGTTTCTTTATCAGTGGTAGAATGCTGACC
ATGATGCCGGGGACGGCAGGGGGGATCCTTCTGTGGAGGAGCTTGAGGGTGTAGTCAGATACTTGCTCAGGGGTGGCCCTGTCCTTGCACTCGGCACCGG
GTGTCACCATGCTTGGCTTGAGGAGGATGCCCTCGAACATCACATTGTTCTCGGCCATGTAGAAGAAGGTCTCCGCCCACACCTTCTGCGCCACCTCGAA
GGTCCTGTCGATGCCATGCTCACCGTCGAGGAGGATCTCAGGCTCGACAATCGGCACCAGCCCGTTAAATGGCGGCGTAGCGGGCAAGGCCCCAGGCAGC
CTCCTTCACGGCGAGTTCAGATGGGCCGTTGGGGATGCTGACAACAGTGCGCCTGAAGATGAAGAACTTCATGTCAGACACTGGAATGATATCCACAAAT
GATAGTATGTGAAAGGTAACTGGCCATTATATTTGTAGGTGAAAAATTTGTCTCACCACTTGGCGAAGCGAGCGCCCTGCTGGTAGTATGCCGCCTCGCG
CGAGGCAAGGCCGTCGAGACCTTGGCACCATGACTCGTTGGGTCAGTTTGGAGTGAAATTCATACCTTGTCGACCTTGATACCTGGAACGATTTTCTGCT
CAGTGAGGATGTCGACAATCTTCTTGCCATCTACAGTTGACTGGTACAGAGTCTCCTCGAAGAGGATAGCACCGGAGATGTACTGTCCCAAGCCCGGTGC
GGTGACAAGGAGGGTCCGGTAAGCCTGGCGGTTGGCCTCGGTGTTCTCAAGGCCAATTGACGCAAGCCTCTTACCGCAGGTCGCGTTCGACTCATCCATG
GCAAGGATACCCCTTCCTGGTGATGCAATGGTTTTC