Detailed information on CNT30697426


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30104130Oryza sativaOryza rufipogon98.68100.3199.69975forward

Expression of CNT30697426

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MDGKARRSLQPGGWRPGERPTPVKAASGAPPGIATNSRLSRFRSERQLTSATLWNWRIPVTARAHCWPGLSTSSLLAAAA*

>peptide 2 (53 aa)
MQKRYIEICLVSPFFWTACDAVHLNLCLVERLLVSKPVLVGSSVQFDLSCSCL*

>peptide 3 (47 aa)
PLHHPSSLPIFTLPLRPPLDLDAPTSAQATADGVRRVGGLLAGGLRV*

>peptide 4 (38 aa)
MSDGRKGAEEPATRRVAARRAADAREGCVWGSTRNRHQ*

>peptide 5 (34 aa)
PTPPSLLPAYLHSPPATAARSGCADFGSGDGRRR*

Sequence

>CNT30697426
CCCCACTCCACCATCCCTCCTCCCTGCCTATCTTCACTCTCCCCCTGCGACCGCCGCTAGATCTGGATGCGCCGACTTCGGCTCAGGCGACGGCCGACGG
CGTTAGGCGCGTTGGCGGCTTGCTGGCTGGCGGGCTGAGGGTGTGAGGTAGGCGGCGTCGCGAATCGCGGGCGCGCACAGCGGCTGCGCCGTGCCCATGA
GCGATGGACGGAAAGGCGCGGAGGAGCCTGCAACCAGGCGGGTGGCGGCCAGGCGAGCGGCCGACGCCCGTGAAGGCTGCGTCTGGGGCTCCACCAGGAA
TCGCCACCAATAGCCGGCTCTCACGCTTCAGATCCGAACGCCAGCTGACCAGCGCCACCCTCTGGAACTGGAGAATCCCAGTCACTGCTCGTGCGCACTG
CTGGCCCGGCCTCTCGACGTCCTCCCTTCTGGCAGCCGCTGCTTGATTGCTTGTGAACTATGATTTTGGTGTTGCGGCCTACTCAGTGCTCACCCATCAC
ACTCATACCTGAGAAACTGGTGCTATGAAAATCTGCATATTGGACTGTTTATGCAATCATTTCAAAAGCAGATCATTTATGTCCTGATGCCGCAGTCATC
TCTACTTCACTAGTTGAGTTAAGCAATCGCTAATTGCTTGGAAAACTAGGAAGCACAATATAGCTGAAGGTCCAGACAGGGGTTTGACATCATGGCTTAG
AGCAATAGTACCATGCCATTTTAGAGTGAAGTAGTATTCCCAGGATGCAAAAGAGATACATTGAAATTTGCCTAGTAAGTCCCTTTTTTTGGACTGCTTG
CGATGCCGTTCATCTAAACTTATGTCTGGTTGAACGGCTTTTGGTTTCTAAGCCTGTACTTGTAGGAAGTAGTGTTCAATTCGATCTCAGTTGTAGCTGT
TTATGATATTTGTATTGCTATTGTTTGATACCATATTGTTGTCAAATTGATTAATCGAATGAATATGTATGTCGATGCATTTGAATCC