Detailed information on CNT30697405


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 6e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677012Oryza sativaSetaria viridis46.9230.2190.14213forward
CNT30524410Oryza sativaSetaria italica46.9227.2490.14213forward
CNT30295002Oryza sativaTriticum aestivum43.8338.5792.96199forward
CNT30555388Oryza sativaOryza glaberrima85.6877.18100389forward
CNT30438779Oryza sativaAegilops tauschii42.2930.4391.67192forward
CNT30664041Oryza sativaTriticum dicoccoides43.6152.893.94198forward
CNT30465769Oryza sativaSaccharum spontaneum46.2636.5289.52210forward
CNT30137065Oryza sativaLolium perenne35.2435.0192.5160forward
CNT30353507Oryza sativaEragrostis tef35.6812.6892.59162forward
CNT30365046Oryza sativaSorghum bicolor46.2621.8190210forward
CNT30498372Oryza sativaDigitaria exilis3735.3790.48168forward

Expression of CNT30697405

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MKNPSMENMASRPFLISFTFSSAAWSGSLASPSGSNGPPGWSLSSR

>peptide 2 (67 aa)
HFETIYSGSKYFSATNPNTWSFLSEDQNEQVFKFISQLDDNLHVHLTHSSTLLKLLPSSSRVRLKLT*

>peptide 3 (45 aa)
TSRQFTQVANISQPQIQTLGPSYQKIRMNRFSNSSPNSTIIYTYI*

Sequence

>CNT30697405
CCACTTCGAGACAATTTACTCAGGTAGCAAATATTTCTCAGCCACAAATCCAAACACTTGGTCCTTCCTATCAGAAGATCAGAATGAACAGGTTTTCAAA
TTCATCTCCCAACTCGACGATAATTTACACGTACATTTAACACATTCTTCCACCCTTCTCAAACTCCTCCCTTCTTCTTCCCGGGTAAGATTAAAATTAA
CTTGAGGCCAGCCAGCGTCGCCGGCGGCGAGATGTTTACAGGTTGTTGCCGAAGGGGTCGCTGAGGTGCTTGGAGAGGTTCTCGACGGGGCCCTCGCCGG
TGACGTAGGCCTGGATGAAGAACCCCAGCATGGAGAACATGGCCAGCCGCCCGTTCTTGATCTCCTTCACCTTCAGCAGCGCCGCCTGGTCCGGGTCGCT
CGCCAGCCCCAGCGGGTCGAATGGGCCACCTGGGTGGAGCTTGTCCTCCAGATC