Detailed information on CNT30697397


BLAST search results

BLAST vs Swiss-Prot:
sp|B3A0N2|NLTP_LYCBA, E-value = 2e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555884Oryza sativaOryza glaberrima29.9245.29100149forward
CNT30250949Oryza sativaAvena sativa17.6721.9592.0588forward
CNT30578365Oryza sativaOryza barthii25.922.79100129forward

Expression of CNT30697397

Peptides detected in this lncRNA

>peptide 1 (93 aa)
LGAVDGGADGEGDGDAAFAGDGGGVAHVEVPEGGGHVLEAAAGTARSTTSRRRSSPPPTPSPPPPPPPPPPPTQPAPSSCEHPPLSRSRSSSS*

>peptide 2 (94 aa)
LEQSTEVLMGKATETPHLLGMEAALPMLRFLKEEAMFLRQLQARRDRRRHVAAAHRRRRPLRHHRRRHHRHQRNQRHRPASTRHCLDRDLALAN*

Sequence

>CNT30697397
CTTGGAGCAGTCGACGGAGGTGCTGATGGGGAAGGCGACGGAGACGCCGCATTTGCTGGGGATGGAGGCGGCGTTGCCCATGTTGAGGTTCCTGAAGGAG
GAGGCCATGTTCTTGAGGCAGCTGCAGGCACGGCGCGATCGACGACGTCACGTCGCCGCAGCTCACCGCCGCCGACGCCCTCTCCGCCACCACCGCCGCC
GCCACCACCGCCACCAACGCAACCAGCGCCATCGTCCTGCGAGCACCCGCCATTGTCTCGATCGAGATCTAGCTCTAGCTAACTAGCAACAATGTACACT
GGTAGTGAGCTGTAAGCTAGAGCTTGTGGTGGAGTACTGGAGTGAGCAAAGCTGTCGAGGAGGGGTGGTATAAATAGCTAGCGATAGATGGAGGTGGAGA
AGAAAGAAATTAAGGCCGGGTTAATTAGGTTAGCTTAGCTGGTTAGCGATAGGAAACTTCCAGATCGGCCGGCCGGCCGGAGATGGGAGATGATCTAC