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Detailed information on CNT30697376


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677085Oryza sativaSetaria viridis19.2248.6590.08252forward
CNT30523740Oryza sativaSetaria italica20.7539.3184.19272forward
CNT30314796Oryza sativaCorylus avellana20.0638.2882.51263forward
CNT30518741Oryza sativaJuglans regia19.1550.682.47251forward
CNT30702585Oryza sativaQuercus lobata4.1223.3888.8954forward
CNT30273043Oryza sativaChenopodium quinoa20.0610.5484.03263forward
CNT30381342Oryza sativaManihot esculenta16.727.181.28219forward
CNT30405165Oryza sativaBeta vulgaris13.233.0284.97173forward
CNT30708796Oryza sativaGlycine max11.932.6480.77156forward
CNT30223861Oryza sativaHordeum vulgare9.2321.391.74121forward
CNT30586189Oryza sativaMusa acuminata12.8923.6785.21169forward
CNT30541563Oryza sativaBrassica napus13.5826.6979.78178forward
CNT30237332Oryza sativaBrassica oleracea9.7653.3381.25128forward
CNT30258087Oryza sativaAvena sativa20.8258.3390.84273forward
CNT3075755Oryza sativaBrassica juncea13.5826.1479.78178forward
CNT306434Oryza sativaZea mays18.9298.4188.31248forward
CNT30610790Oryza sativaGossypium raimondii18.4679.0883.06242forward
CNT30216367Oryza sativaKalanchoe fedtschenkoi14.2651.6687.17187forward
CNT30207455Oryza sativaHelianthus annuus14.1928.1481.72186forward
CNT30128108Oryza sativaCorymbia citriodora12.1330.486.16159forward
CNT30345063Oryza sativaEragrostis tef20.9810088.36275forward
CNT30371265Oryza sativaOryza glumipatula30.7444.78100403forward
CNT30570332Oryza sativaVitis vinifera19.0741.8880.8250forward
CNT30319836Oryza sativaAsparagus officinalis12.6620.883.13166forward
CNT30104026Oryza sativaOryza rufipogon25.3237.6100332forward
CNT30582028Oryza sativaEchinochloa crusgalli12.8123.691.67168forward
CNT30604735Oryza sativaOryza punctata14.0421.8397.28184forward
CNT30334895Oryza sativaCynara cardunculus16.6353.5679.36218forward
CNT3040014Oryza sativaMarchantia polymorpha6.0326.2589.8779forward

Expression of CNT30697376

Peptides detected in this lncRNA

>peptide 1 (37 aa)
IAFRFCVASTSDCPPDKNCTKQQSINIIDQLYFQVYS*

>peptide 2 (45 aa)
MLTVEEDLRLDNRHQPVVLVLFKKIVHACSIIRKEIYYVLAVFVL*

>peptide 3 (37 aa)
MSTIFLPSTVDWYRVSSKRIAPEMYCPKPGAVTRRVR*

>peptide 4 (68 aa)
SRSGSASPPPPTAHPTRTAPNNNQSILSISSTFRFILDHLHLQRQLVVSLCKKNHVRISRSTFAVAVS*

>peptide 5 (48 aa)
MYLRNGGVAGKAPGSLLHGEFRWAVGDADNSAPEDEELHVRHWNDIHK*

>peptide 6 (46 aa)
HRVQVLRRLHLRLPTRQELHQTTINQYYRSALLSGLFLIIYICRDS*

Sequence

>CNT30697376
CATCGCGTTCAGGTTCTGCGTCGCCTCCACCTCCGACTGCCCACCCGACAAGAACTGCACCAAACAACAATCAATCAATATTATCGATCAGCTCTACTTT
CAGGTTTATTCTTGATCATCTACATCTGCAGAGACAGTTAGTAGTATCGTTGTGCAAGAAGAATCATGTCAGAATTAGCAGATCAACATTTGCAGTGGCA
GTTTCTTGATCAACATTTCCAGTCAGGTTAAGCTTTTAACATTTGCAGCGGCAGTTTCTTGATCAACATTCCAAGTCAGGTTAAGCCATTTTGCAAGAAG
TAAAGCAATATTAGTAGCTTCCTAAGCTTTAGTTTCAGTTTCTTTATCAGTGGTAGAATGCTGACCATGATGCCGGGGACGGCAGGGGGGATCCTTCTGT
GGAGGAGCTTGAGGGTGTAGTCAGATACTTGCTCAGGGGTGGCCCTGTCCTTGCACTCGGCACCGGGTGTCACCATGCTTGGCTTGAGGAGGATGCCCTC
GAACATCACATTGTTCTCGGCCATGTAGAAGAAGGTCTCCGCCCACACCTTCTGCGCCACCTCGAAGGTCCTGTCGATGCCATGCTCACCGTCGAGGAGG
ATCTCAGGCTCGACAATCGGCACCAGCCCGTTGTCCTAGTATTATTCAAGAAAATTGTTCATGCTTGCAGCATCATCAGGAAAGAGATTTATTATGTTCT
TGCAGTTTTTGTTCTGTAATCAAGTTTGATATGTACCTGAGAAATGGCGGCGTAGCGGGCAAGGCCCCAGGCAGCCTCCTTCACGGCGAGTTCAGATGGG
CCGTTGGGGATGCTGACAACAGTGCGCCTGAAGATGAAGAACTTCATGTCAGACACTGGAATGATATCCACAAATGATAGTATGTGAAAGGTAACTGGCC
ATTATATTTGTAGGTGAAAAATTTGTCTCACCACTTGGCGAAGCGAGCGCCCTGCTGGTAGTATGCCGCCTCGCGCGAGGCAAGGCCGTCGAGACCTTGG
CACCATGACTCGTTGGGTCAGTTTGGAGTGAAATTCATACCTTGTCGACCTTGATACCTGGAACGATTTTCTGCTCAGTGAGGATGTCGACAATCTTCTT
GCCATCTACAGTTGACTGGTACAGAGTCTCCTCGAAGAGGATAGCACCGGAGATGTACTGTCCCAAGCCCGGTGCGGTGACAAGGAGGGTCCGGTAAGCC
TGGCGGTTGGCCTCGGTGTTCTCAAGGCCAATTGACGCAAGCCTCTTACCGCAGGTCGCGTTCGACTCATCCATGGCAAGGATACCCCTTCCTGGTGATG
CAATGGTTTTC