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Detailed information on CNT30697340

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30555359	Oryza sativa	Oryza glaberrima	24.47	3.22	91.37	139	forward
CNT30109132	Oryza sativa	Oryza longistaminata	24.65	17.43	96.43	140	forward
CNT30101096	Oryza sativa	Oryza rufipogon	24.12	6.29	92.7	137	reverse complement
CNT30116355	Oryza sativa	Oryza nivara	24.65	15.09	93.57	140	forward

Expression of CNT30697340

Peptides detected in this lncRNA

>peptide 1 (64 aa)
TYIGCGFSWDKWSMQLQQRCRSIRSPIAGLTQEDSEIDRSIHRRPAGRRRAVQSSWVLAVAVAG*

>peptide 2 (52 aa)
MIGRSMQMHAVNHPWSMDQQQQQGGHWLVRPEDRFIYHHTIDGASRPAIGCV*

Sequence

>CNT30697340
AACATACATAGGATGTGGTTTTTCATGGGATAAATGGAGTATGCAGCTGCAGCAGAGGTGCCGGTCGATCCGGTCCCCCATTGCTGGGCTTACGCAAGAA
GACAGTGAGATCGACCGATCGATCCATCGGCGGCCTGCCGGCCGGCGACGTGCTGTGCAGAGCAGCTGGGTCCTCGCCGTCGCCGTCGCTGGCTAGTTGG
CTGTGTATAGCTAGTACCTCCTAGCTATCTAGGTGCAGGCCATCGCATGCATGATCGGTCGATCGATGCAGATGCATGCAGTTAATCATCCATGGTCCAT
GGACCAGCAGCAGCAGCAGGGTGGCCACTGGCTAGTACGGCCAGAGGATCGATTTATATATCATCATACCATTGATGGAGCTAGCCGTCCAGCTATAGGC
TGTGTTTAGTTCAGCGCAAAGTTTGAATTTTGGTTGAAATTGGAGATGATGTGACTAAAAAGTTGTGTGTGTATGACAGATTGATGTGATGGAAAAGGAC
TGAAGTTTGGATCCAAACTTTGAATCTAAACACAGCCATAGATGAATACAATCGAGGTTCACCTCTCC