Detailed information on CNT30697306


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30597047Oryza sativaOryza meridionalis31.2749.3897.92480forward
CNT30104230Oryza sativaOryza rufipogon47.6229.6899.45731forward
CNT30551796Oryza sativaOryza brachyantha20.3939.9793.61313forward

Expression of CNT30697306

Peptides detected in this lncRNA

>peptide 1 (42 aa)
YIYAKLCSNQIDSQATHTGSIQIRLHTRLLQRQNTRYVYQTL*

>peptide 2 (31 aa)
MPSLASAASPSLVYLPSCASELALARRSSAV*

>peptide 3 (43 aa)
MPPRARQGRRDLGTMTRCWSQQGAQDPDIEHKFRRINVVVPSI*

>peptide 4 (45 aa)
MLTVEEDLRLDNRHQPVVLVLFKKIVHACSIIRKEIYYVLAVFVL*

>peptide 5 (60 aa)
CIYTQNFAVTKSIHRPHIQVVYRFVYTQGYCRGKTRGMYIKRSRKDSCDEIHDEPRMFSR*

>peptide 6 (66 aa)
MSNKDQGSVWSEIHTLSTLIPGTIFCSVRMSTIFLPSTVDWYRVSSKRIAPEMYCPKPGAVTRRVR*

>peptide 7 (48 aa)
MYLRNGGVAGKAPGSLLHGEFRWAVGDADNSAPEDEELHVRHWNDIHK*

>peptide 8 (57 aa)
MQYSFNFVHRSQPVTVTTHWLQCPRGTSSIAVAVVRSSSSSRFTVLIGLDRISRRSS*

Sequence

>CNT30697306
TGTATATATACGCAAAACTTTGCAGTAACCAAATCGATTCACAGGCCACACATACAGGTAGTATACAGATTCGTCTACACACAAGGTTATTGCAGAGGCA
AAACACGAGGTATGTATATCAAACGCTCTAGAAAAGATTCATGTGATGAAATACATGATGAACCACGTATGTTCTCAAGGTAAAATTAATTAATGCAGTA
TAGTTTTAACTTTGTCCATCGATCTCAACCTGTAACTGTGACGACACACTGGCTACAGTGCCCTCGAGGTACTAGCAGTATAGCAGTAGCTGTAGTACGT
AGCAGCAGCAGCAGCAGGTTCACTGTCTTGATTGGATTGGATCGGATTAGTAGACGTAGTTCTTGACGAACATGCCCTCCTTGGCCTCGGCGGCCTCGCC
GTCGCTGGTGTACTTGCCGAGCTGCGCCAGCGAGTTGGCCTTGGCGCGGAGGAGCAGCGCGGTGTAGTCAGATACTTGCTCAGGGGTGGCCCTGTCCTTG
CACTCGGCACCGGGTGTCACCATGCTTGGCTTGAGGAGGATGCCCTCGAACATCACATTGTTCTCGGCCATGTAGAAGAAGGTCTCCGCCCACACCTTCT
GCGCCACCTCGAAGGTCCTGTCGATGCCATGCTCACCGTCGAGGAGGATCTCAGGCTCGACAATCGGCACCAGCCCGTTGTCCTAGTATTATTCAAGAAA
ATTGTTCATGCTTGCAGCATCATCAGGAAAGAGATTTATTATGTTCTTGCAGTTTTTGTTCTGTAATCAAGTTTGATATGTACCTGAGAAATGGCGGCGT
AGCGGGCAAGGCCCCAGGCAGCCTCCTTCACGGCGAGTTCAGATGGGCCGTTGGGGATGCTGACAACAGTGCGCCTGAAGATGAAGAACTTCATGTCAGA
CACTGGAATGATATCCACAAATGATAGTATGTGAAAGGTAACTGGCCATTATATTTGTAGGTGAAAAATTTGTCTCACCACTTGGCGAAGCGAGCGCCCT
GCTGGTAGTATGCCGCCTCGCGCGAGGCAAGGCCGTCGAGACCTTGGCACCATGACTCGTTGTTGGAGCCAGCAAGGGGCACAAGACCCTGACATCGAGC
ACAAATTCAGAAGAATTAATGTTGTAGTTCCTTCAATCTAGAACAATGATTTTCTCTAGTAATAACAACTCTAACACATTCAGTTCTTTAACAGCTTTAA
TAAATTTGATACTACTTTGAATGAGCAACAAGGATCAGGGGTCAGTTTGGAGTGAAATTCATACCTTGTCGACCTTGATACCTGGAACGATTTTCTGCTC
AGTGAGGATGTCGACAATCTTCTTGCCATCTACAGTTGACTGGTACAGAGTCTCCTCGAAGAGGATAGCACCGGAGATGTACTGTCCCAAGCCCGGTGCG
GTGACAAGGAGGGTCCGGTAAGCCTGGCGGTTGGCCTCGGTGTTCTCAAGGCCAATTGACGCAAGCCTCTTACCGCAGGTCGCGTTCGACTCATCCATGG
CAAGGATACCCCTTCCTGGTGATGCAATGGTTTTC