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Detailed information on CNT30697298


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005030, E-value = 8e-93

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30104177Oryza sativaOryza rufipogon92.0899.7696.7849forward

Expression of CNT30697298

Peptides detected in this lncRNA

>peptide 1 (87 aa)
MHGELREIEIGEESGGFSLHGCSSNMTLFPSIWSSISIIAARMWLQLISVEAALGNVSYRQPEALLRLLPSARGLSLTRPYVQVAAM*

>peptide 2 (40 aa)
DLRGQRKPLLLPPLSSSLLVLSFLPQAELSSHFSSPNPIQ*

>peptide 3 (32 aa)
MCHVSRCSLTLLWYLLCLLIACDESVRLDAFLG

>peptide 4 (32 aa)
MSYASCVVIALPRAARAMSDLLQLGSCPFGLP*

Sequence

>CNT30697298
GACTTAAGGGGGCAGAGAAAACCCCTTCTTCTTCCTCCCCTTTCATCTTCACTGCTTGTTCTTTCTTTTCTTCCTCAAGCTGAGCTCTCATCTCACTTCT
CCTCCCCAAATCCCATCCAATAGCCCAAGATCAATCCCTGCATGTTAGATCACAACAATCCCCATCATCCAAGCTTTCCATCCATCCGAACATCTTGCAC
ATGCATGGAGAGTTGAGAGAGATCGAAATAGGAGAAGAGAGTGGTGGTTTCAGCCTGCATGGTTGCAGCAGCAACATGACTTTGTTTCCCTCCATTTGGT
CATCCATCTCCATTATTGCAGCTAGGATGTGGCTGCAGCTCATTTCGGTTGAAGCAGCCTTAGGTAACGTCTCTTATCGTCAGCCCGAGGCCTTGCTCCG
TCTCTTGCCATCAGCCCGAGGCCTTAGCCTCACACGACCCTACGTCCAGGTTGCTGCCATGTGAGCGAAGTCCGGTGGAAGTTGGAGAAAAGGGGAGTGA
AAATAGAAATCGATTTCTGAGATAGCTATTGAGCTGAAAGATATTCGGAGATTCCGGAGAGTAACGAGCCATATCCCGAGGAGGATAGTGACTACCCTCA
GCAGCAAGGAGAGGATTCCGGTTATGAGTTATGCTTCTTGTGTGGTCATTGCTCTACCGAGGGCGGCGAGGGCAATGAGTGATCTCTTGCAGCTTGGCTC
TTGCCCGTTTGGTTTGCCCTAGTGGGGTTGAGGCACCACTGATTTTATCTTTTGCTTATGAACTATATTTGAGACTTCCACTGCTATATTTATGTGTTGT
ATGTTGGGACCTCGGACCCTATTATGTGTCATGTATCTCGCTGCTCTTTGACCCTATTATGGTACTTGCTATGTTTATTAATTGCTTGCGATGAAAGTGT
GAGGCTAGACGCATTCCTGGGG