CANTATAdb - search

Detailed information on CNT30697250

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000427, E-value = 3e-131

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30115463	Oryza sativa	Oryza nivara	52.72	54.81	96.18	262	forward

Expression of CNT30697250

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MHFVEHLGRVLHLLLRSTTVADLRRPAVSRICISVSREATYAASRR*

>peptide 2 (29 aa)
MLIPIVKLFCLQIKLHAMMNILLVIMPCL*

Sequence

>CNT30697250
GCCATTAGAACTCTAGCTCAGCTATTGTGTGTTGGCATCCTTATCCTCCACAGTTTCCTTACACCCTAAGCTAAGCTCTCATAAAAACCTCATCCGTCTC
TGCCTTCTTCCTGGAATGCATTTCGTCGAACACCTTGGGCGCGTGCTGCACCTTCTTCTCCGCTCCACCACTGTAGCCGATCTTCGTCGTCCCGCCGTCT
CTCGAATTTGTATATCGGTTAGTCGTGAGGCAACGTATGCAGCTTCCAGGAGGTGAAGGTTGATCAAGAATATATCAAGAATAAGAACTATCCTGAGCAG
GCAAGTCATCACCCCATCCCTTGAGCATGTTGATCCCAATTGTGAAATTGTTTTGTTTGCAAATAAAATTGCATGCAATGATGAATATCCTACTTGTTAT
TATGCCATGCCTTTGATTATTGTTTATCTCATTATTTCCTTGTACCAATGATTACGTATGAGTCCTTAGTCAATTATGACAAAAGCTTAGTAATGCT