Detailed information on CNT30697233


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF89|CB5_ARATH, E-value = 1e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555350Oryza sativaOryza glaberrima95.4963.1699.17360forward
CNT30249379Oryza sativaAvena sativa43.7741.5696.36165forward
CNT30597100Oryza sativaOryza meridionalis100.2751.4397.09378forward
CNT3039554Oryza sativaMarchantia polymorpha25.9926.7893.8898forward

Expression of CNT30697233

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MKNPSMENMASRPFLISFTFSSAAWSGSLASPSG

>peptide 2 (52 aa)
NPNTWSFLSEDQNEQVFKFISQLDDNLHVHLTHSSTLLKLLPSSSRVRLKLT*

>peptide 3 (30 aa)
IQTLGPSYQKIRMNRFSNSSPNSTIIYTYI*

Sequence

>CNT30697233
AAATCCAAACACTTGGTCCTTCCTATCAGAAGATCAGAATGAACAGGTTTTCAAATTCATCTCCCAACTCGACGATAATTTACACGTACATTTAACACAT
TCTTCCACCCTTCTCAAACTCCTCCCTTCTTCTTCCCGGGTAAGATTAAAATTAACTTGAGGCCAGCCAGCGTCGCCGGCGGCGAGATGTTTACAGGCTG
GGCGTCCTCTCGGCGGCGCCGGAGATGACGGTGAGCAGGTTCTCGACGGGGCCCTCGCCGGTGACGTAGGCCTGGATGAAGAACCCCAGCATGGAGAACA
TGGCCAGCCGCCCGTTCTTGATCTCCTTCACCTTCAGCAGCGCCGCCTGGTCCGGGTCGCTCGCCAGCCCCAGCGGG