Detailed information on CNT30697227


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001506, E-value = 3e-174

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555405Oryza sativaOryza glaberrima43.4216.33100211forward
CNT30371329Oryza sativaOryza glumipatula43.4225.4898.58211forward
CNT30106601Oryza sativaOryza longistaminata43.422499.05211forward
CNT30104147Oryza sativaOryza rufipogon43.4223.81100211forward
CNT30578166Oryza sativaOryza barthii43.4230.85100211forward

Expression of CNT30697227

Peptides detected in this lncRNA

>peptide 1 (68 aa)
RRKGDRAAEDSTALGRGGGGGGRRLSGAWRRRWCEGEAARWCGGARRPAVAAMLQVIDYKFLNRVWSC*

>peptide 2 (61 aa)
EEKGTGRRRTRRPSGEAAVAVGGGSAARGGGAGAKAKRRGGAAALGGQRWRRCCKSSITSF*

>peptide 3 (45 aa)
QKKRGPGGGGLDGPRERRRWRWAAAQRRVAAALVRRRSGEVVRRR*

>peptide 4 (33 aa)
MMCCQWRLIDSRRRPLNFCLVFLEDTRDVFIVM*

>peptide 5 (44 aa)
MQCLKPCSFPVVFSFVVCFSVPIVNLVSSSASCHLLKGISLKCLG

Sequence

>CNT30697227
CAGAAGAAAAGGGGACCGGGCGGCGGAGGACTCGACGGCCCTCGGGAGAGGCGGCGGTGGCGGTGGGCGGCGGCTCAGCGGCGCGTGGCGGCGGCGCTGG
TGCGAAGGCGAAGCGGCGAGGTGGTGCGGCGGCGCTAGGCGGCCAGCGGTGGCGGCGATGTTGCAAGTCATCGATTACAAGTTTCTGAATCGGGTGTGGT
CTTGTTGAAGCCCCATGATGTGTTGCCAATGGAGATTAATTGATTCTAGAAGAAGACCTTTGAACTTTTGTCTTGTTTTTCTTGAAGATACTAGAGATGT
TTTTATTGTGATGTAGCTAGAAAATTAGAATCTTAACATTTTCCCTGAAATGCAGTGTCTCAAACCTTGTAGTTTCCCAGTAGTTTTTAGTTTTGTAGTT
TGTTTTTCGGTTCCTATTGTAAACCTTGTAAGTTCTTCGGCTTCTTGCCATCTTTTGAAAGGAATTAGTTTGAAATGTTTGGGGTT