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Detailed information on CNT30697225


BLAST search results

BLAST vs Swiss-Prot:
sp|B3A0N2|NLTP_LYCBA, E-value = 7e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677319Oryza sativaSetaria viridis7.6628.5788.4678forward
CNT30523964Oryza sativaSetaria italica7.6624.5387.1878forward
CNT30136754Oryza sativaLolium perenne7.1731.4787.6773forward
CNT30371462Oryza sativaOryza glumipatula62.383895.75635forward
CNT30578372Oryza sativaOryza barthii60.6145.1491.57617forward

Expression of CNT30697225

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MHGAIADPTCPHVIAADAPGAATTIATTITATTTLQLTAAISS*

>peptide 2 (66 aa)
MIYLLQSVERLMGKPTLTPHLPGTPATVPRCTARSPIPPARTLSPPTPPAPQPPSPPQSRRPPPCS*

>peptide 3 (37 aa)
KEKKCIYIGSYFMGKCFISREISHCCFHPPTLIAIKK*

Sequence

>CNT30697225
CAAAGAAAAAAAATGCATATATATAGGTAGTTATTTTATGGGAAAATGTTTCATATCTCGAGAAATATCTCATTGTTGCTTTCATCCCCCCACCTTAATA
GCCATTAAAAAGTAAAACAAAATGATAAGATAGATTAATATTAAATATGCATGTCCATAAATATACATGTTTAAATTAAACTTGTACAAGTTGTAACAAT
AATAACAGATATAATAGCGAAAATACGTTAACTAGTGTTAGTTTAGTTTGTTTTTTAATTTAACTTGTATAAGTTGAATTTAATCTTTTATGTCTATGAA
GTGAGATATATCTCACATATGGTAATCTATCTTAACTTGTAAAAGTTTTTATTAACTATTGCTCCATTTTAGATTATAAGACGTTTTGACTTTGGTTAAA
GTTAAAATACTGTAAGTTTTACTGATTTTGTAGTAAAAAAGTAGTATCTTTTTTAACCCATGACAAATATATTATGAAAATTTATTCAATTATGGATTTA
ATGAAACTATGATGGTATTTAAATATTATTACTTTTTTCTACAGAATTAGTTAAACTTAGAGAAGTTTAACTTTAACCAAAGTTAAAACGTCTTATAACC
TGAAACGGAGGGAGTATTTAGATAGCACGTAAAAAATAAAGAGATATATGCGTGTATATATATATATAGAGAGAGAGAGAGGAGTCATAGAGAGATGATA
TACTTGTTGCAGTCGGTGGAGAGGCTGATGGGGAAGCCGACGTTGACGCCGCACTTGCCGGGGACGCCGGCGACGGTGCCGAGATGCACGGCGCGATCGC
CGATCCCACCTGCCCGCACGTTATCGCCGCCGACGCCCCCGGCGCCGCAACCACCATCGCCACCACAATCACGGCGACCACCACCTTGCAGTTAACTGCA
GCCATATCTAGCTAAACTGACGGATAGCTAGGTGATTAAGCTAGCTAGCTTGATTATATCAGTGAGTGTCTCCTCGTCGCCGGTGATGGATCGTCGGTCG
ATGGGTGGAGGGTATAAA