Detailed information on CNT30697223


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521236Oryza sativaSetaria italica20.418.8786.67120forward
CNT30109013Oryza sativaOryza longistaminata46.0962.7396.31271forward
CNT30103753Oryza sativaOryza rufipogon47.2855.0597.48278forward
CNT30495712Oryza sativaDigitaria exilis10.8826.2392.1964forward

Expression of CNT30697223

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MVILYALGYNNLILISIEGMWFRCYTLEFILHLHHLHCI*

>peptide 2 (36 aa)
MLYSGIHTAFASLALHLKLCREPMVATVPVQHRILP*

>peptide 3 (36 aa)
RPGKKGRRRKGKKEAEGIEVKKEMRGFGCRCPWRPR*

>peptide 4 (31 aa)
MQLHTLLGVKAGVHIIALYMHILQDVMKIIDR

Sequence

>CNT30697223
GCAGACCTGGGAAGAAGGGAAGAAGAAGAAAGGGAAAGAAGGAAGCGGAGGGAATTGAGGTGAAGAAGGAAATGAGGGGTTTTGGTTGCCGCTGCCCATG
GAGGCCTAGGTGATGCCACTTCGGAATGCAACTAGAGTTCATCTCATCATCGGTGAAGGCAAGTAAACGTAGCGGTGGTTTGCTACAGCCTTGACTTGTT
ATTTGATTCTACCTCCACGTTGAAATTATATATCATCAACCAAGATTATTATATATTACACCGAGGATTTACCTATCTGAATCATACTTATTGATTTTAC
ACTGTTTATGGTTATACTTTATGCTCTTGGTTATAATAACCTTATACTGATCTCCATCGAAGGAATGTGGTTCCGATGTTATACTCTGGAATTCATACTG
CATTTGCATCACTTGCATTGCATTTGAAGTTATGTCGTGAACCTATGGTTGCGACCGTACCGGTACAGCATCGTATATTGCCGTAATACGATGCAGCTTC
ACACCTTGTTGGGTGTGAAGGCAGGAGTACATATCATTGCATTGTATATGCACATATTGCAGGACGTTATGAAAATTATTGATCGAAG