Detailed information on CNT30697180


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555431Oryza sativaOryza glaberrima9.7122.7898.8990forward
CNT30107368Oryza sativaOryza longistaminata26.2121.5895.47243forward
CNT30578260Oryza sativaOryza barthii10.4621.5198.9797forward

Expression of CNT30697180

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MQDCKYLVPKSTNQSEHYKHVALDFTCHFHYEWHFSIDNLFAVALISVCLGRTSDKNVPIRVLPAKVSCIQ*

>peptide 2 (64 aa)
LHFAAATAGDGDREPPLSDLTSPLPLPPAGRVRGGRAEDGAGASVTVGRGPAASSVRSDMLNSK*

>peptide 3 (60 aa)
SLRRRHRWRRRPRASAIRPYLAAAAAAGWESEGRTRGGRCRRFGYGRPRTCSEFGSIRHA*

>peptide 4 (60 aa)
MCQYVCYQLKYLVSSKYVGRRTRINFEEWPNLKRAPSCVHLLPGMHLVYPVELNERMIAI*

>peptide 5 (32 aa)
MIQVMSIVFSKYYSSQECSKPTICLDYGIGTL*

>peptide 6 (31 aa)
FTSPPPPLATATASLRYPTLPRRCRCRRLGE*

Sequence

>CNT30697180
CTTCACTTCGCCGCCGCCACCGCTGGCGACGGCGACCGCGAGCCTCCGCTATCCGACCTTACCTCGCCGCTGCCGCTGCCGCCGGCTGGGAGAGTGAGGG
GCGGACGCGCGGAGGACGGTGCAGGCGCTTCGGTTACGGTCGGCCGAGGACCTGCAGCGAGTTCGGTTCGATCCGACATGCTTAATTCGAAATAAACAGG
ACAAATCAGGAATCTTGAAGCGCATCAGGTAGCTTAGCTTGGTCTGAACTTCACCAGAATGTAGAAGAGATTATGCAGGATTGCAAATATCTTGTACCTA
AGAGTACCAATCAATCAGAGCACTACAAACATGTGGCCTTGGATTTCACATGCCATTTTCACTATGAATGGCATTTTTCGATTGACAATCTATTTGCGGT
GGCACTGATCTCGGTTTGTCTTGGAAGAACTAGTGACAAAAATGTGCCAATACGTGTGTTACCAGCTAAAGTATCTTGTATCCAGTAAATATGTTGGCAG
AAGAACTAGGATTAATTTTGAAGAGTGGCCTAATCTGAAACGTGCTCCATCTTGTGTTCATTTGTTGCCTGGTATGCATCTTGTCTATCCCGTGGAACTC
AATGAGAGGATGATAGCAATCTAACTGGAGTGTAGAATGTTGGAAGCTCAAGGTATGATTTCTCACTGTTATATATACTTCATCTCTTGCTAATACATGA
GACATTTGCTTGCTGCGCCATGGCCTATGTAATCTTACTAGGAGTAGGTAGGAGCAATTACTATTGACTTGTTATAAATGGCCTCAGGTGTTCATGATAC
AAGTAATGTCCATTGTTTTCTCCAAGTATTATTCTTCACAAGAGTGCTCTAAACCAACCATCTGTCTAGATTATGGAATAGGCACACTATAACATGAAAT
CAGTACATGCATTTACATGTTGTCAAC