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Detailed information on CNT30697166


BLAST search results

BLAST vs Swiss-Prot:
sp|P93431|RCA_ORYSJ, E-value = 1e-58

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374643Oryza sativaArabidopsis thaliana19.5523.5581.58114forward
CNT30296867Oryza sativaTriticum aestivum34.8228.8881.77203forward
CNT30392014Oryza sativaTriticum turgidum34.8239.1981.77203forward
CNT30662845Oryza sativaTriticum dicoccoides23.527.8581.75137forward
CNT3060875Oryza sativaArabidopsis lyrata24.0131.6782.14140forward
CNT3074932Oryza sativaBrassica juncea22.1340.8284.5129forward
CNT30261873Oryza sativaBrassica rapa22.1346.2482.95129forward
CNT306857Oryza sativaZea mays35.339.6883.5206forward
CNT3068390Oryza sativaLeersia perrieri39.6243.6792.21231forward
CNT30684251Oryza sativaTriticum urartu23.513.4681.75137forward
CNT30478171Oryza sativaArabidopsis halleri22.1316.4881.4129forward
CNT30104149Oryza sativaOryza rufipogon49.7429.77100290forward
CNT30117928Oryza sativaOryza nivara63.1252.4299.46368forward
CNT30604795Oryza sativaOryza punctata47.3417.4697.83276forward
CNT30551777Oryza sativaOryza brachyantha35.5120.3792.27207forward

Expression of CNT30697166

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MYPYSMSFSIVILGCSNSGGPSLEFTSLLPMFSTPVSDTHLRTSSS*

Sequence

>CNT30697166
GGAGTGCAAACCGTATTGTTCCCATTGCTTAATTTAGCATTTTGGCTGACAGTAAACCGTCTTACAGTATTGTTCTAAGAAAACACTGGATGGACACAGA
AATTGACAAATGATACCCAAATGAAATATACTCATGTATAGTATAGCCCATATCTTTATATTATATTATTATTAACAAAAACTTGTCATGCCCAGCTATG
GCTTGGGCGCGATCTGATACACAGAACAAAGAGAAAACATAAAAAGGAGAAATAATTAATAGCAAGCGTCAAGCCGGCCTGCTTAAAAGGTGTAAAGGCA
GCTGCCGTCGTCGCTCCTCGCCGTTGGGTCGAAGTTCTTGGCAACAGGGTCGGTGCAACCTTCCGGCACAGGCAGCTGCACACGCTTGACGTTCTCCTGC
TCCTTCACAAGCATGTATCCGTACTCCATGAGCTTTTCGATCGTCATCTTGGGCTGCTCGAACTCCGGTGGGCCCTCCCTCGAGTTCACCAGCCTCTTGC
CAATGTTCTCCACACCCGTGTCCGACACCCACTTGCGCACCTCGTCGTCGTAAACACGGGCACGAAGAGCGCCGAAGAAATCT