Detailed information on CNT30697161


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002948, E-value = 8e-105

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523179Oryza sativaSetaria italica75.4955.890.91154forward
CNT3089385Oryza sativaVigna radiata30.8817.990.4863reverse complement
CNT30554197Oryza sativaOryza glaberrima10042.6898.53204forward
CNT30143656Oryza sativaMedicago truncatula29.415.429060reverse complement
CNT30256205Oryza sativaAvena sativa56.869.384.48116forward
CNT3015666Oryza sativaZea mays52.943.4288.89108forward
CNT30349956Oryza sativaEragrostis tef73.5357.9292150forward
CNT30596024Oryza sativaOryza meridionalis99.0275.0999.5202reverse complement
CNT30370879Oryza sativaOryza glumipatula10088.3199.02204reverse complement
CNT30646316Oryza sativaCannabis sativa29.916.0188.5261reverse complement
CNT30319789Oryza sativaAsparagus officinalis64.2262.9882.44131reverse complement
CNT30102419Oryza sativaOryza rufipogon10067.7799.02204reverse complement
CNT30575034Oryza sativaOryza barthii10045.0399.02204forward
CNT30496834Oryza sativaDigitaria exilis36.762.2485.3375forward
CNT30116624Oryza sativaOryza nivara10019.7199.51204reverse complement
CNT30174954Oryza sativaVigna angularis30.8824.6192.0663reverse complement

Expression of CNT30697161

Peptides detected in this lncRNA

>peptide 1 (55 aa)
SFPEANLQRTPGLSVLGLEQFGMGDRPGNSSRVHTSEDKVCRKDMCWSVRAVYDL*

Sequence

>CNT30697161
CTTCTTTTCCGGAAGCCAATCTCCAAAGAACTCCAGGGTTAAGCGTGCTTGGCCTGGAGCAATTTGGGATGGGTGACCGACCGGGAAATTCTTCCCGGGT
GCACACGAGTGAGGACAAAGTGTGCAGAAAAGATATGTGTTGGTCTGTGAGGGCAGTCTATGACCTATGAAAGCTATCAGATGTAAGTGGGCCCGGCCTG
GGGG