Detailed information on CNT30697104


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30104189Oryza sativaOryza rufipogon49.1984.94100423forward

Expression of CNT30697104

Peptides detected in this lncRNA

>peptide 1 (51 aa)
SKVKGLVVHRLLAVAFPPEEEEEMGHPAAGREERRRRPMASRAARRGDHWK*

>peptide 2 (60 aa)
QSERFSCSPVAGRGLPAGGGGGDGPSGGGAGGASAETHGVAGCPPRRSLEVAVQSINEAE*

>peptide 3 (84 aa)
MSWSLRQQAIEISSRASGVVLELKSGSFVFGNCFIELRGTLASYSFSFFTFKALTSIERKEAVSLLANRSLLCRLFSLSKVLFF*

>peptide 4 (62 aa)
MDLGQKKEIGQAFGLHPLCSSDNRQHLLELKDVMVIETTGDRNILKSFRGGFGVEIRELCVW*

Sequence

>CNT30697104
AGCAAAGTGAAAGGTTTAGTTGTTCACCGGTTGCTGGCCGTGGCCTTCCCGCCGGAGGAGGAGGAGGAGATGGGCCATCCGGCGGCGGGGCGGGAGGAGC
GTCGGCGGAGACCCATGGCGTCGCGGGCTGCCCGCCGCGGAGATCACTGGAAGTAGCAGTTCAAAGCATAAACGAAGCAGAATAAAGAGATTACAATAGT
GGTAAATTTTCCTGAGTGGCCACAAAAGAGAAGGTCGTTCACAAAAGCGAGGGGATGGATTTGGGACAGAAGAAGGAGATAGGACAGGCATTTGGGTTGC
ACCCTCTTTGTTCATCCGACAATCGCCAACACCTTTTGGAGCTCAAGGATGTCATGGTCATTGAGACAACAGGCGATCGAAATATCCTCAAGAGCTTCAG
GGGTGGTTTTGGAGTTGAAATCCGGGAGCTTTGTGTTTGGTAATTGCTTCATTGAGCTTCGTGGAACATTGGCAAGCTACTCCTTCAGTTTCTTCACCTT
TAAGGCCTTAACTTCAATCGAGAGGAAGGAAGCAGTTTCCTTGTTAGCCAACCGCTCACTCTTGTGTCGTTTGTTTTCTCTATCCAAAGTTCTTTTCTTC
TAGCGAGTGATCTTCCTCGCGGAGAGCTCATGTTCAGCCTCCATACCGCTGCAGTCAAAATCCGGCGAGTCATGCTAATCCTGAGAGTGCTGCTCCAAAC
TATCTGCCGATGAGACAGGGACAGTCTAGTCCTGAGGAGCAGGCGGAGACACCTGGGAAGGCACAACAATTTCGTCCATCTCGGCAATAGACGGCCAGGC
TTGAACTGCAGGTTAGATCGCGAGCTGAAGGCCATCACCTTCTCCACCACCGTGGTTGTT