CANTATAdb - search

Detailed information on CNT30697077

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30117905	Oryza sativa	Oryza nivara	71.24	70.13	100	810	forward

Expression of CNT30697077

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MQYSFNFVHRSQPVTVTTHWLQCPRGTSTAAAAGSLS*

>peptide 2 (43 aa)
MYIYAKLCSNQIDSQATHTGSIQIRLHTRLLQRQNTRYVYQTL*

>peptide 3 (63 aa)
MPSLASAASPSLVYLPSCASELALARRSSAFCVASTSDCPPDKNCTKQQSINIIDQLYFQVYS*

Sequence

>CNT30697077
TGTGAAGCAAGGCTAAGGGGGTAACCAGAATAATTCCAGAATCACAAGCATGTATATATACGCAAAACTTTGCAGTAACCAAATCGATTCACAGGCCACA
CATACAGGTAGTATACAGATTCGTCTACACACAAGGTTATTGCAGAGGCAAAACACGAGGTATGTATATCAAACGCTCTAGAAAAGATTCATGTGATGAA
ATACATGATGAACCACGTATGTTCTCAAGGTAAAATTAATTAATGCAGTATAGTTTTAACTTTGTCCATCGATCTCAACCTGTAACTGTGACGACACACT
GGCTACAGTGCCCTCGAGGTACTAGCACAGCAGCAGCAGCAGGTTCACTGTCTTGATTGGATTGGATCGGATTAGTAGACGTAGTTCTTGACGAACATGC
CCTCCTTGGCCTCGGCGGCCTCGCCGTCGCTGGTGTACTTGCCGAGCTGCGCCAGCGAGTTGGCCTTGGCGCGGAGGAGCAGCGCGTTCTGCGTCGCCTC
CACCTCCGACTGCCCACCCGACAAGAACTGCACCAAACAACAATCAATCAATATTATCGATCAGCTCTACTTTCAGGTTTATTCTTGATCATCTACATCT
GCAGAGACAGTTAGTAGTATCGTTGTGCAAGAAGAATCATGTCAGAATTAGCAGATCAACATTTGCAGTGGCAGTTTCTTGATCAACATTTCCAGTCAGG
TTAAGCCATTTTGCAAGAAGAATCAGGTTAAGCTTTTAACATTTGCAGCGGCAGTTTCTTGATCAACATTCCAAGTCAGGTTAAGCCATTTTGCAAGAAG
TAAAGCAATATTAGTAGCTTCCTAAGCTTTAGTTTCAGTTTCTTTATCAGTGGTAGAATGCTGACCATGATGCCGGGGACGGCAGGGGGGATCCTTCTGT
GGAGGAGCTTGAGGGTGTAGTCAGATACTTGCTCAGGGGTGGCCCTGTCCTTGCACTCGGCACCGGGTGTCACCATGCTTGGCTTGAGGAGGATGCCCTC
GAACATCACATTGTTCTCGGCCATGTAGAAGAAGGTCTCCGCCCACACCTTCTGCGCCACCTCGAAGGTCCTGTCGATGCCATGCTCACCGTCGAGGAGG
ATCTCAGGCTCGACAATCGGCACCAGCCCGTTGTCCT