CANTATAdb - search

Detailed information on CNT30697076

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30555332	Oryza sativa	Oryza glaberrima	99.21	95.79	98.67	750	forward
CNT30107307	Oryza sativa	Oryza longistaminata	31.22	30.93	86.44	236	forward
CNT30104282	Oryza sativa	Oryza rufipogon	100	36.4	99.87	756	forward
CNT30578243	Oryza sativa	Oryza barthii	99.74	54.64	98.67	754	forward
CNT30117969	Oryza sativa	Oryza nivara	99.74	92.4	97.61	754	forward

Expression of CNT30697076

Peptides detected in this lncRNA

>peptide 1 (65 aa)
HIDAAPPSLPRPSGAALFPSPPCPLLRPPARVPGTAAGVDRGGSVPGRHRRCGLRRLPPWTPSQA*

>peptide 2 (53 aa)
TSMRRRPLFPVRAAPPFSPPHRVPFSGRQRASPAPPPEWIEAAPSPAATVGAD*

>peptide 3 (50 aa)
THRCGAALSSPSERRRPFPLPTVSPSPAASARPRHRRRSGSRRLRPRPPP*

>peptide 4 (34 aa)
MELMHALASTHPPPTASQLLSGCDSSKNNSWVPF*

Sequence

>CNT30697076
ACACATCGATGCGGCGCCGCCCTCTCTTCCCCGTCCGAGCGGCGCCGCCCTTTTCCCCTCCCCACCGTGTCCCCTTCTCCGGCCGCCAGCGCGCGTCCCC
GGCACCGCCGCCGGAGTGGATCGAGGCGGCTCCGTCCCCGGCCGCCACCGTAGGTGCGGATTGAGGCGGCTCCCTCCCTGGACGCCATCGCAGGCGTAGA
TCGAGGCTGCTCCTTCCCCAGCCGCCGACGGCGGGCGTCCATGGCCGCGTCGGGTCCTGATCTTCTATGGAGCTTATGCACGCGCTAGCATCGACGCATC
CTCCCCCAACAGCCTCTCAACTCCTCTCCGGATGTGATTCCAGCAAGAACAATTCCTGGGTGCCTTTTTGATTGACGAAGTGGATTCCGGTGAGAACTTC
TGGCTTGCAGATTTGTGGCGTGCTGGCGAGAAGTTTGAACGGCAAGAACCCGGTGAATTTGCTAATTTGTGGCGTGCTTGTTGATGATCACGGCGACGGT
CACTGCAAGAAGTTTTTTTTTGGCTTGTTGAAGATTTCTGGTTTGCTTTGGTTAGCTTGTTGAAGTATTTATTGACATGACAAGTACTTATACGATTCGG
AAACGGCAAGAGTTTGATTAGAGTTTAATTAGGATTGGTTTGTCTTTCAATGTTTCTAAAAGTGGTGTGAACATGCGGATTCCCAAAACATTGTCAGTTT
CCAATGTATTGTATGACTCGGTTTTCCTTATTTTCATTTTGACTGATTGTCCGATT