Detailed information on CNT30697033


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZUT9|RS51_ARATH, E-value = 4e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675356Oryza sativaSetaria viridis9166.7589.35263forward
CNT30280621Oryza sativaChenopodium quinoa32.5320.3585.1194forward
CNT30184371Oryza sativaSecale cereale20.424.6691.5359reverse complement
CNT30395055Oryza sativaTriticum turgidum20.762.349060reverse complement
CNT30559185Oryza sativaActinidia chinensis54.3359.779.62157forward
CNT30657010Oryza sativaTriticum dicoccoides20.426.0689.8359reverse complement
CNT30313127Oryza sativaCamelina sativa44.2958.4580.47128forward
CNT30682937Oryza sativaTriticum urartu97.2390.0687.9281forward
CNT30597098Oryza sativaOryza meridionalis61.2559.6100177forward
CNT30103935Oryza sativaOryza rufipogon10088.92100289forward
CNT30117875Oryza sativaOryza nivara54.3334.73100157forward

Expression of CNT30697033

Peptides detected in this lncRNA

>peptide 1 (94 aa)
GINKLVSKALSNGLDVPEGALPGTSGEEVDDLHGVLDDAHGHDLLPVVAAVHHERVGQALHDGALRLPEPLRRVPPRRVRQVRRVLRRVHRQVVR

>peptide 2 (93 aa)
AALISSSARHSAMVLMFLKALSLAPVVRRWMISMACLTMRTAMIFFPLLRPCIMSELVRRSTMGHCAFRNLFAEYLPAVCGRYVACFVGFTAR*

Sequence

>CNT30697033
GCGGCATTAATAAGCTCGTCAGCAAGGCACTCAGCAATGGTCTTGATGTTCCTGAAGGCGCTCTCCCTGGCACCAGTGGTGAGGAGGTGGATGATCTCCA
TGGCGTGCTTGACGATGCGCACGGCCATGATCTTCTTCCCGTTGTTGCGGCCGTGCATCATGAGCGAGTTGGTCAGGCGCTCCACGATGGGGCACTGCGC
CTTCCGGAACCTCTTCGCCGAGTACCTCCCCGCCGTGTGCGGCAGGTACGTCGCGTGCTTCGTCGGGTTCACCGCCAGGTAGTCCGCCA