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Detailed information on CNT30697017


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005030, E-value = 8e-93

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30103987Oryza sativaOryza rufipogon91.5791.6899.02815forward

Expression of CNT30697017

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MHGELREIEIGEESGGFSLHGCSSNMTLFPSICLR*

>peptide 2 (40 aa)
DLRGQRKPLLLPPLSSSLLVLSFLPQAELSSHFSSPNPIQ*

>peptide 3 (32 aa)
MSYASCVVIALPRAARAMSDLLQLGSCPFGLP*

>peptide 4 (35 aa)
MCHVSRCSLTLLWYLLCLLIACDESVRLDAFLGTS*

Sequence

>CNT30697017
GACTTAAGGGGGCAGAGAAAACCCCTTCTTCTTCCTCCCCTTTCATCTTCACTGCTTGTTCTTTCTTTTCTTCCTCAAGCTGAGCTCTCATCTCACTTCT
CCTCCCCAAATCCCATCCAATAGCCCAAGATCAATCCCTGCATGTTAGATCACAACAATCCCCATCATCCAAGCTTTCCATCCATCCGAACATCTTGCAC
ATGCATGGAGAGTTGAGAGAGATCGAAATAGGAGAAGAGAGTGGTGGTTTCAGCCTGCATGGTTGCAGCAGCAACATGACTTTGTTTCCCTCCATTTGCC
TTAGGTAACGTCTCTTATCGTCAGCCCGAGGCCTTGCTCCGTCTCTTGCCATCAGCCCGAGGCCTTAGCCTCACACGACCCTACGTCCAGGTTGCTGCCA
TGTGAGCGAAGTCCGGTGGAAGTTGGAGAAAAGGGGAGTGAAAATAGAAATCGATTTCTGAGATAGCTATTGAGCTGAAAGATATTCGGAGATTCCGGAG
AGTAACGAGCCATATCCCGAGGAGGATAGTGACTACCCTCAGCAGCAAGGAGAGGATTCCGGTTATGAGTTATGCTTCTTGTGTGGTCATTGCTCTACCG
AGGGCGGCGAGGGCAATGAGTGATCTCTTGCAGCTTGGCTCTTGCCCGTTTGGTTTGCCCTAGTGGGGTTGAGGCACCACTGATTTTATCTTTTGCTTAT
GAACTATATTTGAGACTTCCACTGCTATATTTATGTGTTGTATGTTGGGACCTCGGACCCTATTATGTGTCATGTATCTCGCTGCTCTTTGACCCTATTA
TGGTACTTGCTATGTTTATTAATTGCTTGCGATGAAAGTGTGAGGCTAGACGCATTCCTGGGGACTAGCTAAGCATGAGTAACGGGTTTT