CANTATAdb - search

Detailed information on CNT30696923

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000307, E-value = 1e-93

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30104264	Oryza sativa	Oryza rufipogon	42.91	55	99.59	242	forward

Expression of CNT30696923

Peptides detected in this lncRNA

>peptide 1 (93 aa)
RWRRTIRALLLLGVESPLQRATARWRKAARRQPTGRRTTERQSGRASREQQAGGSVAPREHVSRSSSAAGVRRRRGSSLRVSRSSRAAAAPQE*

Sequence

>CNT30696923
AACGGTGGCGGCGCACTATAAGGGCCCTGCTGCTCCTCGGAGTTGAGTCCCCCCTACAGCGGGCGACGGCGCGTTGGCGCAAGGCCGCGAGGCGGCAGCC
GACAGGCAGGCGGACAACGGAGCGTCAGAGCGGCCGCGCGAGCCGCGAGCAGCAGGCCGGTGGCAGCGTGGCGCCGCGGGAGCACGTGAGCCGGAGCAGC
AGTGCAGCAGGAGTCCGGCGGCGGCGCGGGAGCTCGCTGCGCGTGAGCAGGAGCAGCCGAGCAGCAGCAGCGCCGCAGGAGTGAGCAGGTCTACAGGGAG
CAGTAGCAGCTGCAGGCCAGCAAGAAGGAAAAGAGAAATGGAAGGTAGCAGCGCCAAAGGAGGAGCTGGAGACTCTGATAGTCTGTCCAGTGTCCACTGC
AGATAAGGAACTTGAAGTGCATATGGCCAATATAGCTAAATTAGCTTATAGCCTTGTACTACTCCTGAAGGGCATTGTTTTGGTTGTCTTTTTCTTCTGA
AATCTGGACCAAATGGTCTTGCATGCTGTGAATATATGGTGTTGTAAACAGTTGTCAATGAGCA