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Detailed information on CNT30696918


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0IQF7|RS16_ORYSJ, E-value = 3e-94

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30515426Oryza sativaJuglans regia37.8814.3886.24189forward
CNT3043803Oryza sativaPrunus dulcis26.6525.3881.95133forward
CNT30391876Oryza sativaTriticum turgidum44.8910087.5224forward
CNT3083687Oryza sativaVigna radiata37.8819.8783.6189forward
CNT30555554Oryza sativaOryza glaberrima81.1649.5798.02405forward
CNT30438780Oryza sativaAegilops tauschii79.1649.1987.85395forward
CNT30247768Oryza sativaAvena sativa61.7250.6688.31308forward
CNT30663140Oryza sativaTriticum dicoccoides64.7346.8187.62323forward
CNT30472632Oryza sativaSaccharum spontaneum81.168.2892.59405forward
CNT30136796Oryza sativaLolium perenne32.2623.5790.06161forward
CNT30721366Oryza sativaTriticum spelta52.7151.1786.31263forward
CNT30120766Oryza sativaCitrus clementina25.6523.6681.25128forward
CNT30151249Oryza sativaBrachypodium distachyon65.7362.9690.24328forward
CNT30104226Oryza sativaOryza rufipogon65.9368.8399.7329forward
CNT30581659Oryza sativaEchinochloa crusgalli34.0726.489.41170forward
CNT30117820Oryza sativaOryza nivara81.1651.9299.75405forward
CNT30176592Oryza sativaVigna angularis37.8823.1985.71189forward

Expression of CNT30696918

Peptides detected in this lncRNA

>peptide 1 (33 aa)
GTWRGRRDHRTSWARSAWGRRRVECGHSGQRCP*

>peptide 2 (40 aa)
MPRRRTSGSRRRGPWRWPGGSRRSATSSLRRGRGSSCRCP*

>peptide 3 (44 aa)
MSMSLKRDLPASRMGSNALRRSISGLISSIGTPFTLISPRPGLQ*

Sequence

>CNT30696918
CTGGAACCTGGCGCGGGCGCCGCGACCACCGAACTTCTTGGGCTCGCAGCGCCTGGGGTCGGCGACGAGTAGAGTGCGGTCATAGCGGGCAAAGATGTCC
TTGACCTCCTTCTTGGATGCCTCGTCGACGTACTTCTGGTAGTAGGCGACGAGGGCCTTGGCGATGGCCTGGCGGATCGCGTAGATCTGCGACGTCTTCC
CTCCGCCGCGGACGCGGATCCTCATGTCGATGTCCTTGAAGCGTGACCTCCCCGCGAGCAGGATGGGCTCGAACGCCTTGAGGCGGAGCATCTCCGGCCT
GATCAGCTCGATCGGGACGCCGTTCACCTTGATCAGCCCGCGCCCCGGCTTGCAGTAGGAGACGGCCACCGCCGTCTTCTTGCGCCCGAAGCACTGGACC
GTGCCTGGCGGCGGGCGGGTGAGCGCGGCGGCCATGGTTGCGGCGGTGGTGGCGCGCGGCGGCGGCTTGGTGCGGGAGAGAGGCGGCGGCGAAGGGGAG