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Detailed information on CNT30696875


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30183250Oryza sativaSecale cereale17.4441.6784.24330forward
CNT30107748Oryza sativaOryza longistaminata9.223.2399.43174forward
CNT30551728Oryza sativaOryza brachyantha7.1960.7181.62136forward

Expression of CNT30696875

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MKRLYVSEGQYNLLEPWSCSFLKFDASHVVALDKKVLEIFEFVLIEGEFAICVSLVSQPNIA*

>peptide 2 (68 aa)
MLGLLAKICRSACCIKVERRVTLEILLAFSNDERKFLPLQIMKEGTCFSSIRALPVLVGPRPHEETLC*

>peptide 3 (73 aa)
WSGTRSPMNSSSFSLERLSMPEREFILVKDQMIFSSIGAAPSVKLMSVMVGHSTIRRSSLGNSPLLKVSRLSS*

>peptide 4 (58 aa)
MNKIAYNAVLYLSCTTNITWIDKPHINECIKTSFSMMHCTRPVFLSYQPFYNPAPYYG*

>peptide 5 (36 aa)
MPLMLLPSTRKYLRFLNLCSLKVSLPSVYPLCLNLT*

>peptide 6 (53 aa)
MSEDLHAEFAWITLVQDVAENLVYIFIHPLPCKLEQSIIVQASNRIGYRLLLWT

Sequence

>CNT30696875
CTGGTCAGGGACAAGGTCACCAATGAACTCGAGCTCCTTCAGTTTGGAGAGATTGTCGATGCCTGAGAGAGAATTCATCTTGGTGAAGGACCAGATGATC
TTCTCAAGCATAGGAGCTGCTCCTTCGGTGAAGCTGATGTCGGTGATGGTAGGGCACTCAACAATAAGAAGGTCGAGCTTGGGAAACTCACCTTTGTTGA
AGGTAAGCAGGCTATCATCATAAGAATTGCCCAAGAGAATTAGACAGCATATGCTTGGTCTTTTAGCGAAGATTTGTAGGTCAGCATGCTGCATCAAGGT
AGAGCGAAGAGTCACCTTGGAAATTTTATTGGCATTTTCAAATGATGAAAGAAAGTTTCTCCCTCTTCAGATAATGAAAGAAGGAACTTGTTTCTCTTCA
ATTCGAGCTCTTCCAGTTTTGGTAGGTCCCCGACCCCATGAAGAGACTCTATGTTAGTGAAGGACAATACAATCTTCTCGAGCCTTGGAGCTGCTCCTTT
CTGAAATTTGATGCCTCTCATGTTGTTGCCCTCGACAAGAAAGTACTTGAGATTTTTGAATTTGTGCTCATTGAAGGTGAGTTTGCCATCTGTGTATCCC
TTGTGTCTCAACCTAACATAGCATAAGTTGGGCAGATCACCGAGACCCTCCAGATTTTTCTGTTTCAATGAGGTGCAACTCAAAGTTACCTTGGCAAGCT
TAGTAAAACGTTCAACAAATAATATAAGAAGCTGGCCCTTTTGCGTGGTACCCTGGAGGCACAGGCTCTCAAGAAGCTTAGGACGGTATTTCAGGCAATG
GGAAATATACTGTGGTAAGTCTCCATTGGATGGAGTGCCCTCTCCTTTTGTACTGGGAAAAATAGTGATAGACAGAGACCGGAGGCACTCACATAGGTCG
CTGATTGCTGTAAGCAAATTTTTGAGTATGCTCATTACTTGAACTGTTTGAATCAATACAGCCAGCCAGCAGACGCTTTAGCTTAAGGAGCAGGATATGT
TTTGTTGCATACTCAGGCACCTCAGTTTGCGAAATATCCAGTACCTCCAGCTCATAGAGGTTGTTGATTTCACTAGGTAGCTGTGTAACATCTGTTCTCC
TTAGGCTCAAATACTTGAGCAGTAAAATATTGTTGCAAATGTCCTTGAGGTAGTGCTGGTTCCTCTGGAAGCATTGACAACCTTCTAGATCTAACACCTT
AAGCATTGACATTTGAGATGTTTCAGGGAGCTTTCTCAAGAACTTGTCTATTCTATCAGAGCCACGGAGTCGGATGTCATTGAAAATTGAGAAATGGCGA
GCCAAATGACGTGACAGACGTGCCTCCACAATGTGTTGTTTCTTGGCAATTCTGGTAATAAACTCATGAACAAGATCGCCTACAATGCCGTTCTTTACCT
TTCCTGCACCACCAATATCACTTGGATAGACAAGCCACATATCAATGAGTGTATCAAAACATCGTTCAGCATGATGCACTGCACTAGGCCAGTCTTCCTT
AGTTATCAGCCCTTCTACAACCCAGCGCCCTACTATGGTTGACCGTCTGACAGGGTAACCTGGAGGGAAGATTGCTAGGTACAGGAAGCATGACTTGTAT
TCTTTACGGAGATCAGTGTAGGAGAACTTTATCATCTTCTTAGCATTGATGCTTGATTTATTTGAATCCAGGGAATCAAGCAACTTGCGTAGATCTTCTT
TGCTCCTGTTGGGATTGGCGTAGAGGGCATGAGCGAAGATCTTCATGCAGAATTCGCTTGGATAACACTTGTCCAAGATGTCGCGGAAAATCTGGTTTAC
ATCTTTATTCACCCTCTTCCTTGTAAGCTTGAGCAAAGTATCATAGTACAAGCCAGCAATAGAATTGGTTATAGGCTCCTGCTGTGGACAGC