Detailed information on CNT30696864


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001140, E-value = 2e-163

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553780Oryza sativaOryza glaberrima70.8756.6688.34489forward
CNT30597052Oryza sativaOryza meridionalis87.3958.8995.52603forward
CNT30104021Oryza sativaOryza rufipogon10018.66100690forward

Expression of CNT30696864

Peptides detected in this lncRNA

>peptide 1 (78 aa)
HADRCPPPRACSTPSDRRRRPHPEEPAAASLHRPPPSIAVPLESVISEVRGHEEKSSKDCLKKQGKSHIPLEHIEPTL*

>peptide 2 (71 aa)
SCRSLSAASRLQYAVGPPPSSSPRGARCRLPPSAASLHCRAPRIRHFGSPRSRGKEFKRLFEEARQVTHSP*

>peptide 3 (60 aa)
MPIAVRRLAPAVRRRTAAVVLTPRSPLPPPSIGRLPPLPCPSNPSFRKSAVTRKRVQKIV*

>peptide 4 (47 aa)
MVVVIQLKCDSTVGCGCMVLQVAPMVIKDRFAGCIGRHTALATSGNG*

>peptide 5 (39 aa)
MFYFLQINMHYFANYMGSGYYLSARLCHVYLISVLCYLR*

>peptide 6 (29 aa)
MFHGRSYPTKMRFYGGLWVHGFASRAHGN*

Sequence

>CNT30696864
TCATGCCGATCGCTGTCCGCCGCCTCGCGCCTGCAGTACGCCGTCGGACCGCCGCCGTCGTCCTCACCCCGAGGAGCCCGCTGCCGCCTCCCTCCATCGG
CCGCCTCCCTCCATTGCCGTGCCCCTCGAATCCGTCATTTCGGAAGTCCGCGGTCACGAGGAAAAGAGTTCAAAAGATTGTTTGAAGAAGCAAGGCAAGT
CACACATTCCCCTTGAGCATATTGAGCCTACTTTATAAATGTTTTACTTTTTGCAAATAAACATGCATTATTTTGCTAATTACATGGGATCCGGGTATTA
CCTATCTGCTCGCTTGTGCCATGTTTACTTGATATCCGTTCTTTGTTACCTTAGGTAATAAATCGACTAGCTCGTGTTACTTATGTGACCTAGCTAGAAC
TATATGCTTAGCCATGCTTAATTATCAATAGCTCAGTTGATGGGATAATTGCAGTATTAGACCAGTTAGTTTCAGAACGAGCTGTGTGCTCGAGACATCC
GACAATGTTTCATGGTCGTAGTTATCCAACTAAAATGCGATTCTACGGTGGGCTGTGGGTGCATGGTTTTGCAAGTCGCGCCCATGGTAATTAAGGACCG
GTTCGCGGGATGCATTGGAAGACATACAGCGCTTGCCACAAGCGGGAATGGGTAACTGCTTGATCTGTAGTATAGCTTTTCTCTAGCCGA