Detailed information on CNT30696817


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30103747Oryza sativaOryza rufipogon59.4953.3799.84633forward
CNT30116993Oryza sativaOryza nivara59.5952.9298.58634forward

Expression of CNT30696817

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MVMQLFANYGWRFTNRLEYCFPCHVRSSLNFGWLACFILDYVFLSLLLFVIISCSSSE*

>peptide 2 (37 aa)
MLHVVILKQWLCNFSPTMDGDSPIDWNIVFLVMLGLL*

>peptide 3 (35 aa)
MSVTESLVLGPDSFLYVGNFQGNILASTVGSTTKV*

>peptide 4 (79 aa)
ELFELCLSLSLPQDRLPPPSADLSHRSTTNQILSPPTLPYSGESIFPLFPFSFVPFQAPPELSLSCRFTVLSSSFRPFP*

>peptide 5 (70 aa)
SSSSSVFLSLFLKTGCRHRRPISLTGAPLTKSSHHQHCLTPANPFFHFSPSLSSHFKPHRSSLSPAGSRS*

Sequence

>CNT30696817
GAGCTCTTCGAGCTCTGTCTTTCTCTCTCTCTTCCTCAAGACCGGCTGCCGCCACCGTCGGCCGATCTCTCTCACCGGAGCACCACTAACCAAATCCTCT
CACCACCAACATTGCCTTACTCCGGCGAATCCATTTTTCCACTTTTCCCCTTCTCTTTCGTCCCATTTCAAGCCCCACCGGAGCTCTCTCTCTCCTGCCG
GTTCACGGTCTTGAGCTCGTCGTTCCGGCCATTCCCTTAACCCCCTCTGCCGGCCACTACCTTACCTAGGTGTGCTGTACCCGGGAACACCACCGGCCGT
CGGCGTCGCCGCCTTCCGATTACTGGAGCCCCGACGCCCCTCTCCTCCTCCTCTCTGTTCGACCGGAGAGAAGAAGAAGGAAGAGACGGGAAGAAGAAGA
AGAAGAAGAGAAAGAAAAAGAAAAAGAAAAGCCTGACAGAGTCCATTTGGAGTTTGTGCCGAAGCTGGGAGTTCAATTATATAAGTTAGTTTCATGTCAA
CCTAATTCTCAAGTCTAGATTAGATAGATGGTTTAAGTCTATAGCAAAACAGCAAAGTTAGTCTATTCCAAAGCTTTTGCTGCACTAGTTAGCCACAATC
TTGTAAATACCCTATTACTTTATGTAATAATATCTCCTTCAAAGCTATGTCTAAATGTATGTAAAGACGATCCAGATTATTGAAATTGTATCAATCTACT
GATCTAGGGCTTGATACAATTTTAATATGTCGGTTACCGAATCATTAGTTTTGGGACCCGACAGTTTCCTATATGTAGGTAATTTTCAGGGCAACATATT
GGCTTCGACAGTGGGTTCAACTACAAAAGTATGAGGAAGATGGAGTTTTCCTGAATGTTGCATGTCGTAATCTTGAAACAATGGTTATGCAACTTTTCGC
CAACTATGGATGGAGATTCACCAATAGACTGGAATATTGTTTTCCTTGTCATGTTAGGTCTTCTTTAAATTTTGGTTGGTTGGCTTGCTTTATTTTGGAC
TACGTCTTTTTAAGTTTGCTACTTTTTGTAATAATTAGCTGTAGCTCTTCGGAATAAAGGCCGG