CANTATAdb - search

Detailed information on CNT30696611

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005030, E-value = 1e-103

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30101467	Oryza sativa	Oryza rufipogon	88.85	90.94	92.5	813	forward

Expression of CNT30696611

Peptides detected in this lncRNA

>peptide 1 (51 aa)
GHKVSRKPLLLPPLSLPLLVLSFPPQAELPTHFSSPKSHQRTQTQALHIRP*

>peptide 2 (52 aa)
MHGELREIEKEEESGGFNLQGCSSSILFSSIWLSTPLLQLEGGCNSPRVHLF*

>peptide 3 (32 aa)
MSYVSYVVIALPRAARAMSDPLQLGSCPVGLP*

Sequence

>CNT30696611
AGGACATAAGGTGAGCAGAAAACCCCTTCTTCTTCCTCCCCTTTCACTTCCCTTGCTTGTTCTTTCTTTTCCTCCTCAAGCTGAGCTCCCAACTCACTTC
TCCTCCCCCAAATCCCATCAAAGAACCCAAACTCAAGCTCTGCATATTAGACCATAACAATCCCCATCATCTAAGCTTTTCATCCATCCCAACATCTTGC
ACATGCATGGAGAGTTGAGAGAGATCGAGAAGGAAGAAGAGAGTGGTGGTTTCAACCTGCAGGGCTGCAGCAGCAGCATTTTGTTTTCCTCCATTTGGTT
GTCCACTCCATTGCTGCAGCTAGAAGGTGGCTGTAACTCACCCCGAGTTCATCTCTTTTGATTTCGGTTGAAGAAGCCCTAGGCAGCGTCTCTTGCCGTC
AGCCCAAGACCTTGCTCCATCTCTTGCCATCAGCCCGAGACCTTAGCCTCGCACGACCCTATGTCCAGGTTGCTGCGATGTGAGCGAAGTCCAGTGGAAG
TTGGAGAAAAGGGGAGTGAAAATAGAAATCGATTTCTGAGATAGCTTTTGAGCTGAAAGAGATTCGGAGTTTCCGGAGAGTAACGAGCCATATCCCGAGG
AGGATAGTGGCTACCCTCAGCAACAAGGAGAGGATTCCGGTTATGAGTTATGTTTCTTATGTGGTCATTGCTCTGCCGAGGGCGGCGAGGGCAATGAGTG
ATCCCTTGCAGCTTGGCTCTTGCCCGGTTGGTTTGCCCTAGTGGGGTTGTGGTACCACCGGCTTTATCTTTTGCTTATGAACTCTATTTGAGACTTCCGC
TGCTATATTTATGTGTTGTATGTTGGGACCTCGGACCCTATTATGTGTCATGTACCTCGCTGCACTTTAACACTATTATGGTACTTGCTATGTTTATTAA
TTGCTTGCGATGAAA