« Back to Oryza sativa search


Detailed information on CNT30696596


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596657Oryza sativaOryza meridionalis23.2647.0790.27257forward
CNT30102231Oryza sativaOryza rufipogon24.9854.2291.3276forward
CNT30578064Oryza sativaOryza barthii23.8970.7889.39264reverse complement

Expression of CNT30696596

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MLTIPYFSPSLWVTDLNLESKEQLQFIYLHSSNNNPCFL*

>peptide 2 (65 aa)
MPGAGRAVYDLLLSLAWLLPGWFALVGLWHHRLLFCTYGFCLNLPLLLVCYWMGRPYSVPDTCCT*

>peptide 3 (50 aa)
MFPLSSSVLVSSHVSTSCRFMFLALGSSTHGAFVLQVAQGEFCIVLPCTT*

>peptide 4 (40 aa)
IASHFTFFLRLSSLPTFSPKIFFKHPKPNPACHTFGSLGL*

Sequence

>CNT30696596
CCATTGCTAGCCACTTTACGTTCTTCCTTAGGCTGAGCTCCCTCCCCACTTTCTCCCCCAAAATCTTCTTCAAACATCCAAAACCAAACCCTGCATGTCA
CACCTTTGGATCCCTGGGGCTCTAGGTTTTCCATCCATCCAAATATCTTGCACATGCATGGCCATTTGAGAGAGATCGGGAAGGAGGAACAGCAAGGAGC
TGCAGGCTGCGAGGTTGCAGCAGCTGGATGACACGTTTCTTTTCTGTGTTGGTAAGTTCTTTCTACATCCATGGCTCCCTACTTGAGTTCCTATAATGCT
AACAATCCCTTATTTCTCCCCCTCCCTATGGGTCACCGATTTAAATCTTGAGAGCAAAGAGCAGCTACAATTCATATATCTCCACTCCAGCAACAATAAC
CCATGTTTCCTTTGAGTTCCTCTGTTTTGGTGAGTTCTCATGTCTCTACCTCCTGTAGATTTATGTTCTTAGCTTTAGGATCAAGTACTCACGGTGCTTT
TGTCCTGCAAGTAGCGCAAGGTGAGTTTTGTATTGTTCTTCCTTGTACTACTTGATCGTGCTCTTTCTATATTGATAGTTTGATACCCTTCTCCGGTAAA
CCCGTGTACCAGGCACTGCAACCTCACCAAATGTAGGATATAAATGAGCTCACACCTATCCTTCTGCAGCCATCAGTGGATCATGGTGATTTGCATTAGT
GATCCAAGTTGTTGTTGAGTTTGTCGTCCCTAAGAAAATTAGGGCCAGCCTGCTGCACCTCATCCTTTGATTCAGATGTTTCGGAGTACGTGGAGCAAGA
ACCTGAGATTGAGTCTGATGATCTGCAACAACAAGGTAAGGACTCTGGCGTAGAATTGTTCTTCCTGTGTGGTTACTGTTATGCCGGGGGCGGGGAGGGC
AGTGTATGATCTTCTGCTATCTTTAGCTTGGCTCTTGCCCGGTTGGTTTGCCCTTGTGGGGTTGTGGCACCACCGGCTTTTGTTTTGTACTTATGGCTTT
TGTTTGAATCTTCCGCTGCTACTTGTGTGCTATTGGATGGGACGACCCTATTCTGTACCAGATACTTGCTGTACTTGACCCCTTTTTATGCACTCGTGAT
GATGT