Detailed information on CNT30696588


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XI93|NDRP2_ARATH, E-value = 2e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678209Oryza sativaSetaria viridis5031.0682.97182forward
CNT30522419Oryza sativaSetaria italica53.5724.6582.56195forward
CNT30244755Oryza sativaAvena sativa49.7329.2479.56181forward
CNT30457601Oryza sativaSaccharum spontaneum51.9228.3486.77189forward
CNT30150234Oryza sativaBrachypodium distachyon58.2451.5883.02212forward
CNT30103777Oryza sativaOryza rufipogon44.5156.6499.38162forward
CNT30579728Oryza sativaEchinochloa crusgalli42.0319.9584.97153forward
CNT30498141Oryza sativaDigitaria exilis51.9223.4884.13189forward

Expression of CNT30696588

Peptides detected in this lncRNA

>peptide 1 (45 aa)
IYPAKELSYFMKPCAILNSPPALKSLRYPSALSMYCPTGLSSSLP*

>peptide 2 (99 aa)
YISSQRALLLHETLRHLEQPTGAEVLEVPLRLVDVLPDRLVVELAVGGRRVQQVRGGAGDLLLVDALHALLLEHRHGRLRDHLAARHQVAGAGLVLLRH*

>peptide 3 (45 aa)
MVASATTLPLAIRSPEPDLFSSAIEQSLHSYTLQDFFCSVKFRAGA

Sequence

>CNT30696588
TATATATCCAGCCAAAGAGCTCTCCTACTTCATGAAACCCTGCGCCATCTTGAACAGCCCACCGGCGCTGAAGTCCTTGAGGTACCCCTCCGCCTTGTCG
ATGTACTGCCCGACCGGCTTGTCGTCGAGCTTGCCGTAGGTGGACGCCGAGTGCAGCAGGTCCGCGGCGGCGCCGGCGACCTCCTTCTTGTCGACGCCCT
CCACGCTCTTCTGCTGGAACACCGACATGGTCGCCTCCGCGACCACCTTGCCGCTCGCCATCAGGTCGCCGGAGCCGGACTTGTTCTCCTCCGCCATTGA
GCAAAGCTTACACAGTTATACACTCCAAGATTTTTTTTGCAGCGTTAAGTTCAGAGCGGGAGCG