Detailed information on CNT30696552


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004656, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555391Oryza sativaOryza glaberrima43.653.5296.75616forward
CNT30370102Oryza sativaOryza glumipatula87.1244.7699.031231forward
CNT30107329Oryza sativaOryza longistaminata34.61100.298.77489forward
CNT30101516Oryza sativaOryza rufipogon13.0939.8796.76185reverse complement
CNT30577544Oryza sativaOryza barthii8.9940.8487.4127forward
CNT30117626Oryza sativaOryza nivara84.7181.9399.421197forward

Expression of CNT30696552

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MTQISMKIGILLFQVGYLNVRRFAICISLDVYG*

>peptide 2 (35 aa)
MGVIGKSVIRYEPSLLKHFYSTIEVPHSFFGHIYL*

>peptide 3 (52 aa)
VAVADPASPLPRSCRSPASVAPSRRRFPLVVGSAAGFSRRRSPICCRRILLP*

>peptide 4 (53 aa)
SPSLIPHLLCPVLADPPPPSRRHVADSLSSSGAPRGSVGADPQFVVAASFSPD*

>peptide 5 (38 aa)
MINDSNLNEDRHIAIPGWLSECAQVCNLHIIGCIWLIT*

>peptide 6 (42 aa)
MVVISVSTRIVLIWNSTPLMTTLIRQCELCISCSHEQYLFEK*

Sequence

>CNT30696552
GTCGCCGTCGCTGATCCCGCATCTCCTCTGCCCCGTTCTTGCCGATCCCCCGCCTCCGTCGCGCCGTCACGTCGCCGATTCCCTCTCGTCGTCGGGAGCG
CCGCGGGGTTCAGTCGGCGCCGATCCCCAATTTGTTGTCGCCGCATCCTTCTCCCCTGATTGAAGTGTTGTCAAGTTTCTCCGAGTTAGTGAAACTGAGT
TTGGTTCTTTCTATTCAGATACATTGTTTCCTGCATGATCAATGACTCAAATCTCAATGAAGATAGGCATATTGCTATTCCAGGTTGGTTATCTGAATGT
GCGCAGGTTTGCAATTTGCATATCATTGGATGTATATGGTTGATAACTTGATATGGGAGTAATTGGGAAATCTGTGATAAGGTATGAACCTTCCCTTTTG
AAGCATTTCTACAGCACTATTGAAGTACCACATAGTTTTTTTGGCCATATTTATTTATAACCATGCAAGGAATAATAACTCTTCCTGATTAGGGCTAATC
TTTTGTACAAAATCTATGATTAACAGAATTGTTCTAATTTGAAACAGAGCCCTCTGGTTTAGAGCTTGATCAGTGAGTTAAAAAAATTGTAGAATATGTG
AGTACCGAACATGTTATAATTTGAAGCGCACTCCTCTGATTGAAAACTTTGACCAGTCAGGTTTGAACTTTGAATTATATCTCATCTTTATGCATATACT
TTCTTTCATTTCAGGTGAGGGTCATTTTATTTAGAGATTGATTTGAAAAAATTGTAGTAATAACTCTTTCTAATTAGGGCTAAATTTTGTATAAAATATT
TGAGTAGAAGAATTGTTCTGACCTAAAACGGAGTCCTAACATGATATCAGTGAGAGTTACAAAATGGTTGTAATATCTGTGAGTACGAGGATCGTTCTAA
TTTGGAACTCAACTCCTCTGATGACAACTTTAATCAGGCAGTGTGAATTATGCATTTCTTGTTCTCATGAACAATATTTGTTTGAAAAGTGAAAGATCGG
AGGTATGTTTTGCCACGGTGGATGAACAGAAAGCCCGGTGAGGAAGGCAAACATGGAGTGAAGAGGGTATGATGTATGCTGTGGCCAGAAGAAGTTGCTC
CTATGATGGAAATTGTGAGCAAGACAGGCCCTTGAATCCTTTTTTTTTTCCCTGATGAATCTGTAATTTGGATATGCTGCTGGAATCGGTTGAAATCTAT
TTGTAACTCCACTTTCTCATTTCCCATCATATATGTGTGCATTGCTGAAAGTGATGTGAAGAGGGGAGTAGATAGCGTGTAGCCTGGCAGACTATGGATC
ATTGGATTGCATCTATGTTTCCGATGGTCTTGCGGGTTTGAGACTTTGAGCTTGAGAATGTATTTCTATTTTTGTATTTGTCTTTCTGTCACCTCGATGG
ATGGATATTGCGG